Effective results for Synechococcus sp. CB0101 (eggnog40)
Summary
Number of putative secreted proteins: 149
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 110 eukaryotic-like domains, contained in 149 proteins (18 high, 131 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 232348.SCB01_010100001439 | (PF16639) (PF01333) | ER; (ER) | |||
| 232348.SCB01_010100012847 | (PF12046) | ER | |||
| 232348.SCB01_010100012332 | (PF12095) | (ER) | |||
| 232348.SCB01_010100006701 | PF01744 | (ER); ER | |||
| 232348.SCB01_010100007510 | (PF00685) | mitochondrial | |||
| 232348.SCB01_010100001731 | (PF00685) | mitochondrial | |||
| 232348.SCB01_010100001137 | (PF08417) | (ER) | |||
| 232348.SCB01_010100015106 | (PF04481) | mitochondrial | |||
| 232348.SCB01_010100007932 | (PF12452) | (mitochondrial) | |||
| 232348.SCB01_010100006758 | (PF11152) | ER | |||
| 232348.SCB01_010100001404 | (PF02507) | ER | |||
| 232348.SCB01_010100009719 | (PF10716) | ER | |||
| 232348.SCB01_010100015176 | (PF16166) | ER | |||
| 232348.SCB01_010100011212 | (PF13759) | ER; (ER) | |||
| 232348.SCB01_010100014639 | (PF01737) | ER | |||
| 232348.SCB01_010100009724 | (PF11460) | ER | |||
| 232348.SCB01_010100007917 | (PF05019) | (mitochondrial) | |||
| 232348.SCB01_010100005271 | PF00504 | ER | |||
| 232348.SCB01_010100007375 | (PF10693) | (ER) | |||
| 232348.SCB01_010100013414 | (PF07444) | ER | |||
| 232348.SCB01_010100013259 | (PF01716) | ER | |||
| 232348.SCB01_010100002311 | (PF07444) | ER | |||
| 232348.SCB01_010100005069 | PF16709 | ER | |||
| 232348.SCB01_010100000470 | PF01744 | (ER) | |||
| 232348.SCB01_010100009524 | (PF00124) | (mitochondrial) | |||
| 232348.SCB01_010100011197 | (PF11805) | ER | |||
| 232348.SCB01_010100012267 | (PF06514) | ER | |||
| 232348.SCB01_010100008849 | (PF08332) | ER | |||
| 232348.SCB01_010100000857 | (PF01789) | ER | |||
| 232348.SCB01_010100008472 | (PF12437) | mitochondrial; plastid | |||
| 232348.SCB01_010100012697 | (PF11909) | (mitochondrial) | |||
| 232348.SCB01_010100005161 | (PF00124) | mitochondrial | |||
| 232348.SCB01_010100005581 | (PF13326) | ER | |||
| 232348.SCB01_010100007470 | (PF11264) | (ER) | |||
| 232348.SCB01_010100011429 | PF00504 | mitochondrial; not used | |||
| 232348.SCB01_010100005616 | (PF11016) | (ER) | |||
| 232348.SCB01_010100000957 | (PF01169) | (ER) | |||
| 232348.SCB01_010100011439 | (PF04983) (PF00623) | not used | |||
| 232348.SCB01_010100007380 | (PF12159) | (ER) | |||
| 232348.SCB01_010100000570 | (PF06298) | ER; not used | |||
| 232348.SCB01_010100001197 | (PF13759) | (ER) | |||
| 232348.SCB01_010100003597 | (PF01947) | (ER) | |||
| 232348.SCB01_010100000345 | PF04098 | plastid | |||
| 232348.SCB01_010100008107 | (PF01169) | ER; not used | |||
| 232348.SCB01_010100002306 | (PF06596) | ER; not used | |||
| 232348.SCB01_010100013860 | (PF00284) (PF00283) | ||||
| 232348.SCB01_010100013865 | (PF00283) | (ER); not used | |||
| 232348.SCB01_010100005436 | (PF04278) | (ER) | |||
| 232348.SCB01_010100012193 | (PF02427) | ||||
| 232348.SCB01_010100013624 | (PF09366) | ||||
| 232348.SCB01_010100013559 | (PF12600) | ||||
| 232348.SCB01_010100013554 | (PF02532) | not used | |||
| 232348.SCB01_010100001726 | (PF00685) | ||||
| 232348.SCB01_010100000145 | (PF02392) | ||||
| 232348.SCB01_010100011661 | (PF02672) | ||||
| 232348.SCB01_010100002638 | PF00504 | not used | |||
| 232348.SCB01_010100014067 | (PF11623) | ||||
| 232348.SCB01_010100007460 | (PF10013) | not used | |||
| 232348.SCB01_010100001429 | (PF11267) | ||||
| 232348.SCB01_010100003802 | (PF00140) | ||||
| 232348.SCB01_010100011434 | (PF04983) | ||||
| 232348.SCB01_010100007490 | PF03742 | not used | |||
| 232348.SCB01_010100005936 | (PF00124) | ||||
| 232348.SCB01_010100009144 | PF00504 | not used | |||
| 232348.SCB01_010100010420 | (PF13355) | ||||
| 232348.SCB01_010100011062 | (PF02941) | ||||
| 232348.SCB01_010100011444 | (PF00623) | ||||
| 232348.SCB01_010100008092 | (PF05969) | not used | |||
| 232348.SCB01_010100012817 | (PF02531) | ||||
| 232348.SCB01_010100007135 | (PF12204) | ||||
| 232348.SCB01_010100005636 | (PF00140) | ||||
| 232348.SCB01_010100001409 | (PF01701) | not used | |||
| 232348.SCB01_010100009154 | PF00504 | ||||
| 232348.SCB01_010100000045 | (PF03098) | ||||
| 232348.SCB01_010100004072 | (PF00140) | ||||
| 232348.SCB01_010100000025 | PF10712 | ||||
| 232348.SCB01_010100002441 | (PF02943) | ||||
| 232348.SCB01_010100008719 | (PF02672) | ||||
| 232348.SCB01_010100007655 | (PF12437) | ||||
| 232348.SCB01_010100013170 | (PF09366) | ||||
| 232348.SCB01_010100012482 | (PF00796) | not used | |||
| 232348.SCB01_010100006743 | (PF03040) | ||||
| 232348.SCB01_010100002673 | (PF12899) | ||||
| 232348.SCB01_010100007003 | (PF09353) | ||||
| 232348.SCB01_010100009149 | PF00504 | ||||
| 232348.SCB01_010100007732 | PF00504 | not used | |||
| 232348.SCB01_010100012347 | (PF05421) | ||||
| 232348.SCB01_010100004879 | (PF00140) | ||||
| 232348.SCB01_010100005656 | (PF08854) | ||||
| 232348.SCB01_010100002860 | (PF10664) | ||||
| 232348.SCB01_010100002865 | (PF11371) | ||||
| 232348.SCB01_010100008287 | (PF11833) | ||||
| 232348.SCB01_010100012752 | (PF14159) | ||||
| 232348.SCB01_010100009379 | (PF13911) | ||||
| 232348.SCB01_010100013539 | (PF00737) | ||||
| 232348.SCB01_010100011646 | (PF10063) | ||||
| 232348.SCB01_010100012727 | (PF10999) | ||||
| 232348.SCB01_010100012432 | (PF11910) | ||||
| 232348.SCB01_010100013544 | (PF02468) | not used | |||
| 232348.SCB01_010100013085 | (PF00223) | ||||
| 232348.SCB01_010100005201 | (PF00140) | ||||
| 232348.SCB01_010100008102 | (PF01169) | ||||
| 232348.SCB01_010100011826 | (PF08853) | ||||
| 232348.SCB01_010100012702 | (PF12617) | ||||
| 232348.SCB01_010100008924 | (PF06799) | ||||
| 232348.SCB01_010100006286 | (PF11282) | ||||
| 232348.SCB01_010100006421 | (PF11347) | not used | |||
| 232348.SCB01_010100013090 | (PF00223) | ||||
| 232348.SCB01_010100013384 | (PF02245) | ||||
| 232348.SCB01_010100001242 | (PF14159) | ||||
| 232348.SCB01_010100010235 | (PF00124) | ||||
| 232348.SCB01_010100010230 | PF02005 | not used | |||
| 232348.SCB01_010100010345 | (PF00140) | ||||
| 232348.SCB01_010100013664 | (PF02533) | not used | |||
| 232348.SCB01_010100008869 | PF16865 | ||||
| 232348.SCB01_010100013289 | (PF04483) | ||||
| 232348.SCB01_010100005044 | (PF08847) | ||||
| 232348.SCB01_010100001272 | (PF02529) | not used | |||
| 232348.SCB01_010100010220 | (PF08041) | not used | |||
| 232348.SCB01_010100000050 | (PF03098) | not used | |||
| 232348.SCB01_010100008127 | (PF11210) | ||||
| 232348.SCB01_010100010827 | (PF08855) | ||||
| 232348.SCB01_010100004204 | PF04098 | ||||
| 232348.SCB01_010100002326 | PF00504 | ||||
| 232348.SCB01_010100002743 | (PF00124) | ||||
| 232348.SCB01_010100007085 | (PF11360) | ||||
| 232348.SCB01_010100011776 | (PF11317) | ||||
| 232348.SCB01_010100008272 | (PF12049) | ||||
| 232348.SCB01_010100013875 | (PF01788) | ||||
| 232348.SCB01_010100012477 | (PF02605) | ||||
| 232348.SCB01_010100013870 | PF02419 | not used | |||
| 232348.SCB01_010100006201 | (PF11947) | ||||
| 232348.SCB01_010100013050 | (PF05151) | not used | |||
| 232348.SCB01_010100013299 | (PF02245) | ||||
| 232348.SCB01_010100001007 | (PF00140) | ||||
| 232348.SCB01_010100000732 | (PF10674) | ||||
| 232348.SCB01_010100007982 | (PF12527) | ||||
| 232348.SCB01_010100013599 | (PF11378) | ||||
| 232348.SCB01_010100006106 | (PF07082) | ||||
| 232348.SCB01_010100013930 | (PF00685) | ||||
| 232348.SCB01_010100014274 | (PF00140) | ||||
| 232348.SCB01_010100011374 | (PF11341) | ||||
| 232348.SCB01_010100008077 | (PF04483) | ||||
| 232348.SCB01_010100011152 | (PF04839) | ||||
| 232348.SCB01_010100012213 | (PF08332) | ||||
| 232348.SCB01_010100007445 | (PF05019) | ||||
| 232348.SCB01_010100013035 | (PF01405) | not used | |||
| 232348.SCB01_010100009804 | (PF00140) | not used | |||
| 232348.SCB01_010100013324 | (PF02245) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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