Metamenu

Effective results for Cytophaga hutchinsonii ATCC 33406 (eggnog40)

Summary

Number of putative secreted proteins: 88
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 88 proteins (15 high, 73 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
269798.CHU_2304(PF13540) (PF00415)ER
269798.CHU_0799(PF13540) (PF00415)ER
269798.CHU_1221PF06452 (PF07679)ER
269798.CHU_1101(PF13540) (PF00415)(mitochondrial)
269798.CHU_0430(PF13540) (PF00415)ER
269798.CHU_3654(PF13540) (PF00415)(mitochondrial)
269798.CHU_0938(PF07679) (PF13927)(ER)
269798.CHU_2235(PF00759)ER
269798.CHU_0778(PF00759)(mitochondrial)
269798.CHU_1238PF06452ER
269798.CHU_1789(PF08732)(ER)
269798.CHU_1167(PF01436)ER
269798.CHU_0768(PF02494)ER
269798.CHU_0767(PF02494)ER
269798.CHU_2141(PF07676)ER
269798.CHU_0993(PF01062)ER; (ER)
269798.CHU_2043PF06452ER
269798.CHU_2042PF06452ER
269798.CHU_2041PF06452ER
269798.CHU_2040PF06452ER
269798.CHU_3536PF07738ER
269798.CHU_2660(PF03321)mitochondrial
269798.CHU_1796(PF07676)ER
269798.CHU_1561(PF07676)ER
269798.CHU_1585(PF07676)ER
269798.CHU_0961(PF00759)ER
269798.CHU_3435(PF00415)ER
269798.CHU_0980(PF05572)ER
269798.CHU_2870(PF02494)ER
269798.CHU_1335(PF00759)ER
269798.CHU_1336(PF00759)ER
269798.CHU_0422(PF01436)ER
269798.CHU_1117(PF14248)ER
269798.CHU_3670(PF03321)(mitochondrial); mitochondrial
269798.CHU_2818(PF01436)ER
269798.CHU_2715(PF07676)(ER)
269798.CHU_2714(PF07676)ER
269798.CHU_2008(PF07676)ER
269798.CHU_1655(PF00759)ER
269798.CHU_2383(PF14248)ER
269798.CHU_3727PF06452ER
269798.CHU_1730(PF08570)ER
269798.CHU_1429(PF07676)ER
269798.CHU_1646(PF08570)ER
269798.CHU_3486PF05176ER
269798.CHU_2029(PF03190)ER
269798.CHU_2604(PF05572)ER
269798.CHU_2606(PF07676)ER
269798.CHU_3735(PF07676)ER
269798.CHU_2779(PF01436)ER
269798.CHU_1710(PF07676)ER
269798.CHU_1240PF06452ER
269798.CHU_0217(PF07676)ER
269798.CHU_0595(PF07676)ER
269798.CHU_2997(PF03321)mitochondrial
269798.CHU_3113PF13813ER
269798.CHU_2379PF06452mitochondrial
269798.CHU_2972(PF05572)ER
269798.CHU_0125(PF07676)ER
269798.CHU_3233(PF07676)ER
269798.CHU_1193(PF07678)ER
269798.CHU_0939(PF13927)ER
269798.CHU_0482(PF07676)ER
269798.CHU_1454(PF07676)ER
269798.CHU_1820(PF13906)(mitochondrial)
269798.CHU_2260(PF14248)ER
269798.CHU_1556(PF13087) (PF13086)
269798.CHU_1280(PF00759)(mitochondrial)
269798.CHU_0277(PF13087) (PF13086)
269798.CHU_1713(PF07676)(plastid)
269798.CHU_3588(PF13087) (PF13086)
269798.CHU_2163(PF13087)
269798.CHU_1558(PF07676)
269798.CHU_2044PF06452
269798.CHU_1581(PF05693)
269798.CHU_0696(PF01062)
269798.CHU_2595(PF03190)
269798.CHU_2821(PF03190)
269798.CHU_0899(PF03016)
269798.CHU_3653(PF02689)
269798.CHU_2382(PF01062)
269798.CHU_1817(PF01062)
269798.CHU_0855PF06990
269798.CHU_2373(PF05706)
269798.CHU_0456(PF05572)
269798.CHU_1474PF00191
269798.CHU_2185(PF07676)
269798.CHU_2955(PF02171)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================