Effective results for Polaribacter sp. MED152 (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 41 proteins (11 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
313598.MED152_09290				(PF03321)	(mitochondrial)
313598.MED152_05145				(PF07593)	ER
313598.MED152_08700				(PF04784)	ER
313598.MED152_09875				PF14592	ER
313598.MED152_08630				PF14592	ER
313598.MED152_02700				(PF16313)	ER
313598.MED152_05135				(PF07593)	ER
313598.MED152_07155				(PF15902)	ER
313598.MED152_09805				(PF08787)	ER
313598.MED152_06825				(PF04784)	ER
313598.MED152_13274				(PF07593)	ER
313598.MED152_05130				(PF07593)	ER
313598.MED152_09780				PF14592	ER
313598.MED152_09785				(PF08787)	ER
313598.MED152_08095				(PF15902)	ER
313598.MED152_04925				(PF16313)	ER
313598.MED152_08145				(PF07593)	ER
313598.MED152_06195				(PF08787)	ER
313598.MED152_06990				(PF00031)	ER
313598.MED152_02985				PF10326	ER
313598.MED152_12979				(PF16313)	ER
313598.MED152_04165				PF02014	ER
313598.MED152_00480				(PF15902)	ER
313598.MED152_06220				(PF16313)	ER
313598.MED152_07130				(PF03321)	(plastid)
313598.MED152_05335				(PF10013)	mitochondrial; not used
313598.MED152_03720				(PF01679)	ER; not used
313598.MED152_03735				PF14592
313598.MED152_02065				(PF01679)
313598.MED152_12144				(PF02938)
313598.MED152_04720				(PF09445)
313598.MED152_05485				(PF03321)
313598.MED152_04065				PF07801
313598.MED152_05110				PF07492
313598.MED152_09590				PF02893
313598.MED152_10365				(PF10504)
313598.MED152_10875				PF13405
313598.MED152_11939				(PF08787)
313598.MED152_07865				(PF02938)
313598.MED152_14035				(PF07766)
313598.MED152_06885				PF07914

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================