Effective results for Nitrospira defluvii (eggnog40)

Summary

Number of putative secreted proteins: 99
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 40 eukaryotic-like domains, contained in 99 proteins (12 high, 87 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
330214.NIDE2386(PF16889)(mitochondrial)
330214.NIDE1527(PF00839)ER
330214.NIDE2399(PF16889)(mitochondrial)
330214.NIDE1609(PF16561)ER
330214.NIDE4178(PF03781)ER
330214.NIDE4175(PF03781)ER
330214.NIDE1115(PF03781)ER
330214.NIDE0256(PF13646)mitochondrial; (mitochondrial)
330214.NIDE3299(PF03781)ER
330214.NIDE0889(PF10531)mitochondrial; (mitochondrial)
330214.NIDE3373(PF03781)ER
330214.NIDE3368(PF02577)ER
330214.NIDE0058(PF03092)(mitochondrial)
330214.NIDE0263(PF13646)ER
330214.NIDE2682(PF10531)ER
330214.NIDE2680(PF10531)ER
330214.NIDE2681(PF10531)ER
330214.NIDE0199(PF13664)ER
330214.NIDE3796(PF16864)(ER)
330214.NIDE0192(PF03781)(ER)
330214.NIDE0193(PF03781)ER
330214.NIDE0195(PF03781)ER
330214.NIDE3429(PF05711)mitochondrial
330214.NIDE0524(PF13646)ER
330214.NIDE3300(PF03781)ER
330214.NIDE1498(PF00839)ER
330214.NIDE3935(PF03781)ER
330214.NIDE3934(PF03781)mitochondrial
330214.NIDE3451(PF03781)ER
330214.NIDE2899(PF10531)ER
330214.NIDE2898(PF10531)(ER); ER
330214.NIDE1761(PF13436)ER
330214.NIDE2406(PF10531)ER
330214.NIDE2541(PF13664)ER
330214.NIDE1190(PF03781)ER
330214.NIDE3695PF03366ER
330214.NIDE3271PF09459ER
330214.NIDE3278PF09459ER
330214.NIDE4059PF06884ER
330214.NIDE4058PF06884ER
330214.NIDE4267PF14686ER
330214.NIDE3482(PF02012)(mitochondrial)
330214.NIDE0604(PF06455)ER
330214.NIDE0904PF09459ER
330214.NIDE0297(PF00227)(mitochondrial)
330214.NIDE3812(PF12895)ER
330214.NIDE1860(PF03781)ER
330214.NIDE1096(PF12895)ER
330214.NIDE4164(PF07837) (PF02971)
330214.NIDE1288(PF13646)(plastid)
330214.NIDE1286(PF03130) (PF13646)
330214.NIDE2002(PF13646)(ER)
330214.NIDE1931(PF10531)(plastid)
330214.NIDE1740(PF11074)(mitochondrial)
330214.NIDE4147(PF03130) (PF13646)
330214.NIDE4149(PF03130) (PF13646)
330214.NIDE3009(PF16889)plastid
330214.NIDE4150(PF03130) (PF13646)
330214.NIDE0749(PF02012)
330214.NIDE1061(PF07720)
330214.NIDE3342(PF10609)
330214.NIDE2481(PF10609)
330214.NIDE4379(PF13883)
330214.NIDE1608(PF16561)
330214.NIDE0412(PF10609)
330214.NIDE3979(PF16864)
330214.NIDE3560(PF10531)
330214.NIDE3565(PF02943)
330214.NIDE4035(PF03781)
330214.NIDE3177(PF02732)
330214.NIDE3428(PF05711)
330214.NIDE3224(PF12895)
330214.NIDE2751(PF02577)
330214.NIDE2752(PF02577)
330214.NIDE0528(PF04455)
330214.NIDE3309(PF13646)
330214.NIDE3334(PF13661)
330214.NIDE2791(PF16864)
330214.NIDE3206PF12142
330214.NIDE0784PF01231
330214.NIDE0834(PF16114)
330214.NIDE3936PF14686
330214.NIDE3329(PF03031)
330214.NIDE2940(PF09471)
330214.NIDE0958(PF00227)
330214.NIDE0959(PF00227)
330214.NIDE2955(PF09471)
330214.NIDE0179(PF02945)
330214.NIDE1198(PF13646)
330214.NIDE3055(PF00227)
330214.NIDE3056(PF00227)
330214.NIDE3307(PF16864)
330214.NIDE0611(PF10531)
330214.NIDE0972(PF08263)
330214.NIDE2073PF09239
330214.NIDE2074PF04406
330214.NIDE4146(PF13646)
330214.NIDE4148(PF13646)
330214.NIDE2061(PF13883)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================