Effective results for Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 (eggnog40)

Summary

Number of putative secreted proteins: 123
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 123 proteins (18 high, 105 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
335541.Swol_0165				PF13290 (PF13205)	ER
335541.Swol_1701				(PF01257) (PF10589)	ER
335541.Swol_1966				(PF13287)	ER
335541.Swol_1010				(PF07927)	mitochondrial
335541.Swol_1961				(PF13287)	ER
335541.Swol_0170				(PF13205)	ER
335541.Swol_1565				(PF01966)	(mitochondrial)
335541.Swol_1963				(PF13287)	ER
335541.Swol_1189				(PF13205)	ER
335541.Swol_1986				(PF13205)	ER
335541.Swol_2424				(PF01966)	ER
335541.Swol_0348				(PF01966)	mitochondrial
335541.Swol_0755				PF13290	ER
335541.Swol_1968				PF13290	mitochondrial; ER
335541.Swol_1962				(PF13287)	ER
335541.Swol_0657				(PF10589)	(mitochondrial)
335541.Swol_0647				(PF01966)	(mitochondrial)
335541.Swol_2487				(PF13205)	ER
335541.Swol_1078				PF13290	(mitochondrial); mitochondrial
335541.Swol_1320				(PF01966)	mitochondrial; (mitochondrial)
335541.Swol_1831				(PF10588)	ER; (ER)
335541.Swol_1804				(PF01930)	mitochondrial; (mitochondrial)
335541.Swol_0141				PF13290	ER
335541.Swol_0145				(PF01909)	(ER)
335541.Swol_0309				(PF13336) PF02550
335541.Swol_0787				(PF13336) PF02550
335541.Swol_1166				(PF05598) (PF01609)
335541.Swol_1378				(PF03442)	plastid
335541.Swol_1744				(PF13336) PF02550
335541.Swol_2436				(PF10588) (PF02256)
335541.Swol_2502				(PF05598) (PF01609)
335541.Swol_1343				(PF05598) (PF01609)
335541.Swol_0741				(PF05598) (PF01609)
335541.Swol_0138				(PF05598) (PF01609)
335541.Swol_1661				(PF07927)	(mitochondrial)
335541.Swol_1881				(PF05598) (PF01609)
335541.Swol_1747				(PF05598) (PF01609)
335541.Swol_0720				(PF05598) (PF01609)
335541.Swol_0436				(PF13336) PF02550
335541.Swol_1254				(PF01966)	ER
335541.Swol_2128				(PF13336) PF02550
335541.Swol_1014				(PF13336) PF02550
335541.Swol_1017				(PF10588) (PF02256)
335541.Swol_2465				(PF05598) (PF01609)
335541.Swol_0709				(PF05598) (PF01609)
335541.Swol_1076				PF13290 (PF03442)
335541.Swol_1453				PF04212	(ER)
335541.Swol_0059				PF03452	(mitochondrial)
335541.Swol_1056				(PF05598) (PF01609)
335541.Swol_1932				(PF13336) PF02550
335541.Swol_1735				(PF13336) PF02550
335541.Swol_0521				(PF05598) (PF01609)
335541.Swol_1147				(PF13336) PF02550
335541.Swol_0206				(PF01909)
335541.Swol_0337				(PF01966)
335541.Swol_1799				(PF01966)
335541.Swol_0152				(PF01609)
335541.Swol_0158				(PF01966)
335541.Swol_2557				(PF01869)
335541.Swol_2150				(PF01966)
335541.Swol_1756				(PF01966)
335541.Swol_1757				(PF05598)
335541.Swol_0499				(PF01909)
335541.Swol_0783				(PF01257)
335541.Swol_0784				(PF10589)
335541.Swol_1019				(PF01257)
335541.Swol_1967				PF13290
335541.Swol_1945				(PF01869)
335541.Swol_0221				(PF01909)
335541.Swol_0310				(PF05598)
335541.Swol_0794				(PF07927)
335541.Swol_2407				(PF01966)
335541.Swol_2404				(PF01966)
335541.Swol_0638				(PF01909)
335541.Swol_0290				(PF05598)
335541.Swol_0573				(PF07927)
335541.Swol_1426				(PF01966)
335541.Swol_0603				(PF01909)
335541.Swol_1728				(PF01909)
335541.Swol_2517				(PF01930)
335541.Swol_2518				(PF01966)
335541.Swol_1502				(PF01966)
335541.Swol_1509				(PF01966)
335541.Swol_0632				(PF01869)
335541.Swol_2451				(PF05598)
335541.Swol_0352				(PF16983)
335541.Swol_1041				(PF01966)
335541.Swol_0621				(PF07927)
335541.Swol_1772				(PF01966)
335541.Swol_1745				(PF01609)
335541.Swol_1095				(PF01409)
335541.Swol_1094				(PF01409)
335541.Swol_0656				(PF01257)
335541.Swol_1705				(PF01609)
335541.Swol_1702				(PF01257)
335541.Swol_1894				(PF01966)
335541.Swol_0785				(PF10588)
335541.Swol_1018				(PF10589)
335541.Swol_0548				(PF01909)
335541.Swol_0428				(PF01869)
335541.Swol_1602				(PF01966)
335541.Swol_2001				(PF01609)
335541.Swol_2468				(PF13205)
335541.Swol_2130				(PF01966)
335541.Swol_0096				(PF01966)
335541.Swol_0411				(PF01869)
335541.Swol_1298				(PF01909)
335541.Swol_1102				(PF01909)
335541.Swol_0718				(PF05598)
335541.Swol_1592				(PF05598)
335541.Swol_1828				(PF10589)
335541.Swol_1829				(PF01257)
335541.Swol_0279				(PF01966)
335541.Swol_0479				(PF01930)
335541.Swol_2238				(PF01609)
335541.Swol_0514				(PF05598)
335541.Swol_1024				(PF10589)
335541.Swol_1025				(PF01257)
335541.Swol_1029				(PF10588)
335541.Swol_0219				(PF07927)
335541.Swol_0452				(PF01869)
335541.Swol_0523				(PF09419)
335541.Swol_1926				(PF02256)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================