Metamenu

Effective results for Syntrophobacter fumaroxidans MPOB (eggnog40)

Summary

Number of putative secreted proteins: 298
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 64 eukaryotic-like domains, contained in 298 proteins (33 high, 265 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
335543.Sfum_0824PF13187 (PF14691) (PF00037)(mitochondrial)
335543.Sfum_1996(PF01875) (PF01871)ER
335543.Sfum_0115(PF17147) (PF01855)(mitochondrial); plastid
335543.Sfum_3013PF13187 (PF12838)ER; (ER)
335543.Sfum_2971PF13187 (PF12838)ER; (ER)
335543.Sfum_4087(PF04055)mitochondrial; (mitochondrial)
335543.Sfum_0222(PF00112)ER
335543.Sfum_0178PF06739ER
335543.Sfum_1960(PF00037)ER; (ER)
335543.Sfum_2324(PF04055)ER
335543.Sfum_1982(PF07994)ER
335543.Sfum_3690(PF08487)ER
335543.Sfum_2615PF06739ER
335543.Sfum_0610(PF04879)ER
335543.Sfum_0616(PF04055)mitochondrial
335543.Sfum_1325(PF08487)ER
335543.Sfum_2997(PF00886)mitochondrial
335543.Sfum_0903(PF00112)ER
335543.Sfum_0909(PF04055)ER
335543.Sfum_2299PF06739ER
335543.Sfum_2705(PF10588) (PF12838) (PF04879)
335543.Sfum_0630(PF01326)(mitochondrial)
335543.Sfum_0286(PF12849)ER
335543.Sfum_2666(PF01326)(mitochondrial); mitochondrial
335543.Sfum_3625PF13851ER
335543.Sfum_3532(PF02754)mitochondrial; (mitochondrial)
335543.Sfum_2471(PF04055)(ER)
335543.Sfum_0438(PF04055)mitochondrial
335543.Sfum_3522(PF12849)ER
335543.Sfum_2886(PF12849)ER
335543.Sfum_1841(PF06968) (PF04055)(mitochondrial)
335543.Sfum_0396(PF13023)(mitochondrial)
335543.Sfum_2732(PF04187)ER
335543.Sfum_0649(PF01326)mitochondrial
335543.Sfum_3510(PF04879)ER
335543.Sfum_1114(PF04187)ER
335543.Sfum_2252(PF04055)mitochondrial
335543.Sfum_3039(PF00886)mitochondrial
335543.Sfum_1852(PF17124)(ER)
335543.Sfum_0419(PF04055)mitochondrial
335543.Sfum_1273(PF04879)(ER); (mitochondrial)
335543.Sfum_3509(PF10588) PF13187 (PF04879)
335543.Sfum_1478(PF00037)(mitochondrial); mitochondrial
335543.Sfum_2929(PF04055)ER; (mitochondrial)
335543.Sfum_2921(PF04055)(mitochondrial)
335543.Sfum_1107PF06739ER
335543.Sfum_1108PF06739mitochondrial
335543.Sfum_2694(PF00037)ER
335543.Sfum_0865(PF04055)ER
335543.Sfum_1804(PF12838) (PF00037)(ER)
335543.Sfum_1023PF03815ER
335543.Sfum_0196(PF11987)(mitochondrial)
335543.Sfum_4024(PF09825)(ER)
335543.Sfum_3888(PF16561)ER
335543.Sfum_2171(PF04055)(mitochondrial)
335543.Sfum_2212(PF12849)ER
335543.Sfum_0361(PF04055)(mitochondrial)
335543.Sfum_0329PF06739ER
335543.Sfum_0039(PF12849)ER
335543.Sfum_0030(PF10588) (PF04879) (PF00037)
335543.Sfum_1499PF02038ER
335543.Sfum_1329(PF00037)ER
335543.Sfum_4018(PF04055)(mitochondrial)
335543.Sfum_0444(PF09459)ER
335543.Sfum_0443(PF09459)ER
335543.Sfum_0027(PF12849)ER
335543.Sfum_1318(PF04879)(mitochondrial)
335543.Sfum_1311(PF14691) (PF13534) (PF02754)
335543.Sfum_4005(PF00112)(ER)
335543.Sfum_2152(PF10588) (PF12838) (PF04879)
335543.Sfum_0014(PF12838) (PF14691) (PF00037)
335543.Sfum_0168(PF12838)(mitochondrial)
335543.Sfum_1166(PF17147) (PF01855)
335543.Sfum_4076(PF01558)(ER)
335543.Sfum_1977(PF12838) (PF00037)
335543.Sfum_3133(PF00037)(ER)
335543.Sfum_3138(PF17147) (PF01855)
335543.Sfum_1995(PF04055)(plastid)
335543.Sfum_3475(PF04055)(mitochondrial)
335543.Sfum_1181(PF14691) (PF00037)
335543.Sfum_0802(PF04055)(mitochondrial)
335543.Sfum_3070(PF02550) (PF13336)
335543.Sfum_0746(PF02550) (PF13336)
335543.Sfum_1435(PF04055)(plastid)
335543.Sfum_2703(PF01257)(mitochondrial)
335543.Sfum_2704(PF12838) (PF01257)
335543.Sfum_1723(PF12838) (PF14691)
335543.Sfum_2715(PF01058)(ER)
335543.Sfum_2714(PF10588) PF13187
335543.Sfum_3531(PF13534)(mitochondrial)
335543.Sfum_3534(PF12838) (PF00037)
335543.Sfum_0387(PF00037) (PF01855)
335543.Sfum_0388(PF13336) (PF02550)
335543.Sfum_0389(PF02550) (PF13336)
335543.Sfum_1383(PF10609)(mitochondrial)
335543.Sfum_3021(PF13023)(ER)
335543.Sfum_0390(PF02754)(mitochondrial)
335543.Sfum_1286PF13187 (PF12831)
335543.Sfum_0386(PF01558)(plastid)
335543.Sfum_3619(PF00958) (PF01171)
335543.Sfum_1278(PF02550) (PF13336)
335543.Sfum_1109PF06739(ER)
335543.Sfum_1825(PF06968) (PF04055)
335543.Sfum_2022(PF00314)(ER)
335543.Sfum_0035(PF04879)(ER)
335543.Sfum_0844(PF10588) PF13187
335543.Sfum_2146(PF13534) (PF02754)
335543.Sfum_2149(PF00037)(ER)
335543.Sfum_1954(PF10588) (PF04879)
335543.Sfum_2794(PF17147) (PF01855)
335543.Sfum_2979(PF13023)(ER)
335543.Sfum_0301(PF17147) (PF01855)
335543.Sfum_0013PF13187 (PF02754)
335543.Sfum_0017(PF17147) (PF01855)
335543.Sfum_0166(PF04055)
335543.Sfum_1303(PF10609)
335543.Sfum_3220(PF02915)
335543.Sfum_1766(PF04055)
335543.Sfum_1165(PF12838)
335543.Sfum_1168(PF01558)
335543.Sfum_4075(PF01855)
335543.Sfum_2946(PF04879)
335543.Sfum_0822(PF13534)
335543.Sfum_0821(PF12838)
335543.Sfum_0820(PF13534)
335543.Sfum_3927(PF12831)
335543.Sfum_2319(PF04055)
335543.Sfum_3212(PF14330)
335543.Sfum_3041(PF01782)
335543.Sfum_3042(PF01746)
335543.Sfum_3044(PF01245)
335543.Sfum_0315PF10343
335543.Sfum_0318(PF00071)
335543.Sfum_0482(PF02915)
335543.Sfum_2953(PF01058)
335543.Sfum_0819(PF02754)
335543.Sfum_2542(PF05189)
335543.Sfum_2543PF04457
335543.Sfum_0354(PF04055)
335543.Sfum_0960(PF04794)
335543.Sfum_3864(PF00037)
335543.Sfum_1961(PF04055)
335543.Sfum_3264(PF01326)
335543.Sfum_3127(PF04055)
335543.Sfum_3126(PF04794)
335543.Sfum_1985(PF04055)
335543.Sfum_2430(PF04055)
335543.Sfum_2422PF02732
335543.Sfum_2504PF02732
335543.Sfum_3056(PF04055)
335543.Sfum_0103(PF04055)
335543.Sfum_1360(PF04055)
335543.Sfum_1744(PF04055)
335543.Sfum_4057(PF04055)
335543.Sfum_2983(PF10369)
335543.Sfum_2980(PF10369)
335543.Sfum_3115(PF04794)
335543.Sfum_0579(PF01592)
335543.Sfum_2601(PF02527)
335543.Sfum_1228(PF11987)
335543.Sfum_4046PF13187
335543.Sfum_0595(PF01592)
335543.Sfum_2999(PF01782)
335543.Sfum_2996(PF02978)
335543.Sfum_2197(PF04055)
335543.Sfum_2198(PF04055)
335543.Sfum_2456(PF04055)
335543.Sfum_2458(PF04055)
335543.Sfum_0299(PF01558)
335543.Sfum_0349(PF02943)
335543.Sfum_0634(PF01326)
335543.Sfum_1654(PF00071)
335543.Sfum_0919PF13187
335543.Sfum_1734(PF07994)
335543.Sfum_0609(PF12838)
335543.Sfum_3252(PF02915)
335543.Sfum_3000(PF01746)
335543.Sfum_3002(PF01245)
335543.Sfum_0357(PF17124)
335543.Sfum_4043(PF00037)
335543.Sfum_2713(PF01257)
335543.Sfum_2712(PF01257)
335543.Sfum_3536(PF01058)
335543.Sfum_3391PF13187
335543.Sfum_2063(PF01326)
335543.Sfum_4092(PF13534)
335543.Sfum_4093(PF02754)
335543.Sfum_2123(PF00958)
335543.Sfum_2468(PF02915)
335543.Sfum_3022(PF10369)
335543.Sfum_3025(PF10369)
335543.Sfum_1846(PF00037)
335543.Sfum_1844(PF04055)
335543.Sfum_1845(PF01257)
335543.Sfum_2394(PF04055)
335543.Sfum_2644(PF04055)
335543.Sfum_0393(PF02754)
335543.Sfum_3606(PF04055)
335543.Sfum_1265(PF01171)
335543.Sfum_1285PF13187
335543.Sfum_1287(PF12831)
335543.Sfum_3287(PF04879)
335543.Sfum_3038(PF02978)
335543.Sfum_1003(PF04879)
335543.Sfum_0705(PF12849)
335543.Sfum_0416(PF02915)
335543.Sfum_3613(PF10609)
335543.Sfum_0075(PF01875)
335543.Sfum_0079(PF02754)
335543.Sfum_1613(PF01171)
335543.Sfum_1610(PF04055)
335543.Sfum_1299(PF01871)
335543.Sfum_1298(PF01875)
335543.Sfum_2032(PF04055)
335543.Sfum_1822(PF06968)
335543.Sfum_3620(PF03522)
335543.Sfum_0717(PF04055)
335543.Sfum_0716(PF01171)
335543.Sfum_0711(PF04055)
335543.Sfum_0246(PF00037)
335543.Sfum_3195(PF04879)
335543.Sfum_1049(PF12831)
335543.Sfum_1047PF13187
335543.Sfum_2804(PF07998)
335543.Sfum_3409(PF00037)
335543.Sfum_3998PF02732
335543.Sfum_0879(PF12838)
335543.Sfum_0875(PF04055)
335543.Sfum_1905(PF04055)
335543.Sfum_0271(PF16983)
335543.Sfum_2699PF13187
335543.Sfum_2562(PF01326)
335543.Sfum_1585(PF04055)
335543.Sfum_1051(PF02754)
335543.Sfum_1050PF13187
335543.Sfum_3411(PF01592)
335543.Sfum_2839(PF07787)
335543.Sfum_3986(PF04055)
335543.Sfum_3961(PF13534)
335543.Sfum_3960(PF02754)
335543.Sfum_2223PF13187
335543.Sfum_2222(PF01058)
335543.Sfum_3365(PF02938)
335543.Sfum_1800(PF12831)not used
335543.Sfum_1801(PF02754)
335543.Sfum_1806(PF13534)
335543.Sfum_1805(PF02754)
335543.Sfum_2684(PF01592)
335543.Sfum_3088(PF04055)
335543.Sfum_3089(PF04055)
335543.Sfum_1026(PF04187)
335543.Sfum_3058(PF04055)
335543.Sfum_1152(PF02527)
335543.Sfum_3955(PF01058)
335543.Sfum_3886(PF16561)
335543.Sfum_2210(PF04055)
335543.Sfum_3788PF02732
335543.Sfum_1497(PF10609)
335543.Sfum_1147(PF02754)
335543.Sfum_4016(PF04055)
335543.Sfum_0841(PF04055)
335543.Sfum_0842(PF06968)
335543.Sfum_0845(PF01257)
335543.Sfum_0846(PF01257)
335543.Sfum_0848PF13187
335543.Sfum_2147(PF13534)
335543.Sfum_3890(PF10571)
335543.Sfum_1956(PF01257)
335543.Sfum_3302(PF02938)
335543.Sfum_2372(PF04055)
335543.Sfum_3233(PF04055)
335543.Sfum_3158(PF04055)
335543.Sfum_3150(PF02915)
335543.Sfum_0204(PF12838)
335543.Sfum_0200(PF01058)
335543.Sfum_2551(PF02915)
335543.Sfum_2792(PF01558)
335543.Sfum_2483(PF02171)
335543.Sfum_1314(PF04055)
335543.Sfum_1792(PF01058)
335543.Sfum_1796(PF04879)
335543.Sfum_1794(PF12838)
335543.Sfum_1173(PF12838)
335543.Sfum_1176(PF02754)
335543.Sfum_1177(PF12831)not used
335543.Sfum_1179(PF12838)
335543.Sfum_4009(PF04055)
335543.Sfum_2157(PF04055)
335543.Sfum_2150(PF14691)
335543.Sfum_1942(PF01058)
335543.Sfum_1940(PF12838)
335543.Sfum_0543(PF01558)
335543.Sfum_3140(PF01558)
335543.Sfum_0302(PF00037)
335543.Sfum_0544(PF00037)
335543.Sfum_0015(PF01558)
335543.Sfum_0018(PF12838)
335543.Sfum_1011(PF04055)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================