Metamenu

Effective results for Pelobacter propionicus DSM 2379 (eggnog40)

Summary

Number of putative secreted proteins: 252
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 40 eukaryotic-like domains, contained in 252 proteins (27 high, 225 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
338966.Ppro_1192(PF13394) (PF04055)(mitochondrial)
338966.Ppro_1456(PF02310) (PF04055)ER
338966.Ppro_3218(PF00361) (PF00662)ER
338966.Ppro_3390(PF02310) (PF04055)mitochondrial; (mitochondrial)
338966.Ppro_0587(PF00361) (PF00662)ER
338966.Ppro_0614(PF02310) (PF04055)mitochondrial
338966.Ppro_0609(PF16199) (PF04055)mitochondrial
338966.Ppro_2577(PF02310) (PF04055)ER
338966.Ppro_3532(PF00361) (PF00662)ER
338966.Ppro_0920(PF02310) (PF04055)ER
338966.Ppro_0639(PF00361) (PF00662)ER
338966.Ppro_3182(PF00361) (PF00662)ER
338966.Ppro_1634(PF00361) (PF00662)ER
338966.Ppro_2267PF00014ER
338966.Ppro_2795(PF00361)ER
338966.Ppro_2793(PF00146)ER
338966.Ppro_3220(PF00420)ER
338966.Ppro_3221(PF00361)ER
338966.Ppro_1079(PF04055)(mitochondrial)
338966.Ppro_1503(PF00430)ER
338966.Ppro_1502(PF00430)ER
338966.Ppro_1501(PF00137)ER
338966.Ppro_1500(PF00119)ER
338966.Ppro_0641(PF00361)ER
338966.Ppro_0640(PF00361)ER
338966.Ppro_1543(PF12849)ER
338966.Ppro_0070(PF00361)ER
338966.Ppro_1451(PF12849)ER
338966.Ppro_1426(PF13600)ER
338966.Ppro_1623(PF00507)ER
338966.Ppro_0588(PF00361)ER
338966.Ppro_0589(PF00361)ER
338966.Ppro_2565(PF01223)ER
338966.Ppro_2708(PF13600)ER
338966.Ppro_3493(PF12849)ER
338966.Ppro_2615(PF09419)mitochondrial; (plastid)
338966.Ppro_0599(PF00119)ER
338966.Ppro_0596(PF00146)ER
338966.Ppro_0593(PF01058)(mitochondrial)
338966.Ppro_0592(PF00507)ER
338966.Ppro_0591(PF00420)ER
338966.Ppro_0590(PF00499)ER
338966.Ppro_0602(PF00430)ER
338966.Ppro_0601(PF00430)ER
338966.Ppro_0600(PF00137)ER
338966.Ppro_0137(PF01078)(mitochondrial)
338966.Ppro_3530(PF00361)ER
338966.Ppro_3531(PF00361)ER
338966.Ppro_3157(PF12849)ER
338966.Ppro_0637(PF00499)ER
338966.Ppro_0635(PF00146)ER
338966.Ppro_0638(PF00420)ER
338966.Ppro_1962(PF04055)mitochondrial
338966.Ppro_3529(PF00499)ER
338966.Ppro_3523(PF00146)ER
338966.Ppro_0844(PF00231)(ER)
338966.Ppro_0847(PF00137)ER
338966.Ppro_0846(PF00430)ER
338966.Ppro_0628(PF00507)ER
338966.Ppro_1542(PF12849)ER
338966.Ppro_1770(PF01609)mitochondrial
338966.Ppro_3193(PF00507)ER
338966.Ppro_1304(PF04055)(mitochondrial)
338966.Ppro_1301(PF01871)ER
338966.Ppro_3181(PF00361)ER
338966.Ppro_3180(PF00361)ER
338966.Ppro_3183(PF00420)ER
338966.Ppro_3184(PF00499)ER
338966.Ppro_3186(PF00146)ER
338966.Ppro_0175(PF01223)ER
338966.Ppro_0083(PF00882)ER
338966.Ppro_0341(PF01058)mitochondrial
338966.Ppro_1630(PF00146)ER
338966.Ppro_1633(PF00420)ER
338966.Ppro_1632(PF00499)ER
338966.Ppro_1635(PF00361)ER
338966.Ppro_1636(PF00361)ER
338966.Ppro_2676(PF12849)ER
338966.Ppro_2843(PF12849)ER
338966.Ppro_1270(PF04055)mitochondrial; (mitochondrial)
338966.Ppro_1871(PF01223)ER
338966.Ppro_2785(PF00146)ER
338966.Ppro_2787(PF00361)ER
338966.Ppro_0339(PF00361)ER
338966.Ppro_0337(PF00146)ER
338966.Ppro_0336(PF00361)(ER)
338966.Ppro_3504PF05598 (PF01609)
338966.Ppro_2794(PF00346) (PF00329)
338966.Ppro_2791(PF01058)(mitochondrial)
338966.Ppro_3228PF05598 (PF01609)
338966.Ppro_0838(PF13394) (PF04055)
338966.Ppro_0526PF05598 (PF01609)
338966.Ppro_0019PF05598 (PF01609)
338966.Ppro_2638(PF02310) (PF04055)
338966.Ppro_1506(PF00231)(mitochondrial)
338966.Ppro_3342(PF13394) (PF04055)
338966.Ppro_3341(PF13394) (PF04055)
338966.Ppro_2241PF05598 (PF01609)
338966.Ppro_0106PF05598 (PF01609)
338966.Ppro_2763PF05598 (PF01609)
338966.Ppro_0874PF05598 (PF01609)
338966.Ppro_0861PF05598 (PF01609)
338966.Ppro_0605(PF00231)(mitochondrial)
338966.Ppro_0911(PF13394) (PF04055)
338966.Ppro_3534PF05598 (PF01609)
338966.Ppro_3154PF05598 (PF01609)
338966.Ppro_1702(PF13394) (PF04055)
338966.Ppro_3526(PF01058)(mitochondrial)
338966.Ppro_1777(PF16199) (PF04055)
338966.Ppro_1912(PF00216)(ER)
338966.Ppro_3601PF05598 (PF01609)
338966.Ppro_0896PF05598 (PF01609)
338966.Ppro_0943(PF13401)(ER)
338966.Ppro_2580PF05598 (PF01609)
338966.Ppro_2124(PF13401)(ER)
338966.Ppro_2120PF05598 (PF01609)
338966.Ppro_1836PF05598 (PF01609)
338966.Ppro_3479PF05598 (PF01609)
338966.Ppro_3477(PF16199) (PF04055)
338966.Ppro_0427(PF13394) (PF04055)
338966.Ppro_1331(PF13401)(ER)
338966.Ppro_1938(PF04055)(mitochondrial)
338966.Ppro_2825(PF02310) (PF04055)
338966.Ppro_3408PF05598 (PF01609)
338966.Ppro_0741(PF02310) (PF04055)
338966.Ppro_1107PF05598 (PF01609)
338966.Ppro_1108PF05598 (PF01609)
338966.Ppro_1321(PF13401)(ER)
338966.Ppro_2852(PF13401)(ER)
338966.Ppro_1480PF05598 (PF01609)
338966.Ppro_1262(PF01078)(ER)
338966.Ppro_1649PF05598 (PF01609)
338966.Ppro_2682PF05598 (PF01609)
338966.Ppro_3338(PF02310) (PF04055)
338966.Ppro_3339(PF02310) (PF04055)
338966.Ppro_1128PF05598 (PF01609)
338966.Ppro_1013PF05598 (PF01609)
338966.Ppro_1785(PF13394) (PF04055)
338966.Ppro_2479(PF02310) (PF04055)
338966.Ppro_2274(PF13401)(ER)
338966.Ppro_2786(PF00346) (PF00329)
338966.Ppro_2783(PF01058)(mitochondrial)
338966.Ppro_2316(PF04055)
338966.Ppro_2083(PF01078)
338966.Ppro_3356(PF01609)
338966.Ppro_1474(PF04055)
338966.Ppro_1505(PF00306)
338966.Ppro_1508(PF02823)
338966.Ppro_2526(PF04055)
338966.Ppro_2748PF09139
338966.Ppro_3345(PF04055)
338966.Ppro_3528(PF00420)
338966.Ppro_2624(PF02915)
338966.Ppro_1994(PF16983)
338966.Ppro_2753(PF06258)
338966.Ppro_2754(PF04055)
338966.Ppro_3578(PF04055)
338966.Ppro_0848(PF00119)
338966.Ppro_1181(PF00216)
338966.Ppro_1058(PF02915)
338966.Ppro_2665(PF00216)
338966.Ppro_2507(PF04055)
338966.Ppro_2500(PF01609)
338966.Ppro_2765(PF06258)
338966.Ppro_2618(PF01609)
338966.Ppro_0304(PF04055)
338966.Ppro_1624(PF01058)
338966.Ppro_1625(PF00329)
338966.Ppro_2996(PF04055)
338966.Ppro_1724(PF04055)
338966.Ppro_1431(PF02310)
338966.Ppro_1946(PF10609)
338966.Ppro_1890(PF00216)
338966.Ppro_1893(PF00216)
338966.Ppro_2989(PF04055)
338966.Ppro_2381(PF13401)
338966.Ppro_0468(PF02915)
338966.Ppro_0460(PF13401)
338966.Ppro_2942(PF04055)
338966.Ppro_0595(PF00346)
338966.Ppro_0594(PF00329)
338966.Ppro_0607(PF02823)
338966.Ppro_0604(PF00306)
338966.Ppro_0919(PF02310)
338966.Ppro_0280(PF01078)
338966.Ppro_2717(PF01609)
338966.Ppro_0850(PF02823)
338966.Ppro_0630(PF00329)
338966.Ppro_0631(PF00346)
338966.Ppro_0634(PF10588)
338966.Ppro_0140(PF01609)
338966.Ppro_2963(PF01715)
338966.Ppro_1413(PF02310)
338966.Ppro_1965(PF02915)
338966.Ppro_3525(PF00329)
338966.Ppro_3524(PF00346)
338966.Ppro_3520(PF10588)
338966.Ppro_0845(PF00306)
338966.Ppro_0629(PF01058)
338966.Ppro_0152(PF01078)
338966.Ppro_1175(PF04055)
338966.Ppro_1357(PF04055)
338966.Ppro_1353(PF04055)
338966.Ppro_1351(PF00216)
338966.Ppro_2480(PF04055)
338966.Ppro_1284(PF02310)
338966.Ppro_2151(PF02915)
338966.Ppro_2809(PF01964)
338966.Ppro_1828(PF01609)
338966.Ppro_3282(PF04055)
338966.Ppro_3192(PF01058)
338966.Ppro_3190(PF00346)
338966.Ppro_3191(PF00329)
338966.Ppro_3463(PF04055)
338966.Ppro_3512(PF01871)
338966.Ppro_0388(PF02310)
338966.Ppro_1766(PF13401)
338966.Ppro_1765(PF04055)
338966.Ppro_2239(PF04055)
338966.Ppro_3618(PF04055)
338966.Ppro_2940(PF00025)
338966.Ppro_3187(PF10588)
338966.Ppro_3505(PF02915)
338966.Ppro_0556(PF04055)
338966.Ppro_0779(PF04055)
338966.Ppro_1629(PF10588)
338966.Ppro_1626(PF00346)
338966.Ppro_1029(PF04055)
338966.Ppro_1933(PF02915)
338966.Ppro_2596(PF01964)
338966.Ppro_2919(PF00882)
338966.Ppro_0340(PF00346)
338966.Ppro_0180(PF00216)
338966.Ppro_0182(PF04055)
338966.Ppro_1034(PF01964)
338966.Ppro_2280(PF00216)not used
338966.Ppro_1929(PF10609)
338966.Ppro_3094(PF04055)
338966.Ppro_0351(PF04055)
338966.Ppro_1484(PF04055)
338966.Ppro_1261(PF01078)
338966.Ppro_3245(PF01715)
338966.Ppro_1491(PF04055)
338966.Ppro_1490(PF10588)
338966.Ppro_1492(PF04055)
338966.Ppro_1781(PF00216)
338966.Ppro_2472(PF13401)
338966.Ppro_2473(PF10609)
338966.Ppro_1872(PF00216)
338966.Ppro_2879(PF13401)
338966.Ppro_2302(PF00216)
338966.Ppro_1469(PF04055)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================