Effective results for Pseudoalteromonas atlantica T6c (eggnog40)

Summary

Number of putative secreted proteins: 52
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 52 proteins (3 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
342610.Patl_0338(PF02112)ER
342610.Patl_1820(PF14240)(mitochondrial)
342610.Patl_1120(PF14330)(mitochondrial)
342610.Patl_0182(PF00431)ER
342610.Patl_2033(PF13023)(mitochondrial)
342610.Patl_0419(PF13431)ER
342610.Patl_1116PF05577ER
342610.Patl_3659(PF14592)ER
342610.Patl_1099(PF00685)mitochondrial; (mitochondrial)
342610.Patl_4151(PF02460)(ER)
342610.Patl_3224(PF00685)(ER)
342610.Patl_3640(PF14592)ER
342610.Patl_3817(PF04820)(mitochondrial)
342610.Patl_1526(PF14240)ER
342610.Patl_0126(PF03644)ER
342610.Patl_1338PF04733ER
342610.Patl_3128(PF13431)ER
342610.Patl_0109(PF08662)ER
342610.Patl_0823(PF16757)ER
342610.Patl_0831(PF16757)ER
342610.Patl_2032(PF13023)(ER)
342610.Patl_0783(PF14240)(ER)
342610.Patl_4140(PF01679)ER; not used
342610.Patl_2992(PF13431)(ER)
342610.Patl_0450(PF01679)ER; not used
342610.Patl_1939(PF04820)
342610.Patl_1964(PF04820)
342610.Patl_2907(PF14240)
342610.Patl_4184(PF11017)
342610.Patl_3325(PF13023)
342610.Patl_3685(PF04820)
342610.Patl_2784(PF13875)
342610.Patl_3223(PF00685)
342610.Patl_2848(PF11017)
342610.Patl_0076(PF10576)
342610.Patl_4265(PF06119)
342610.Patl_3276(PF04820)
342610.Patl_0802(PF04820)
342610.Patl_0803(PF04820)
342610.Patl_0807(PF04820)
342610.Patl_1501(PF02010)
342610.Patl_1180(PF00685)
342610.Patl_3045(PF09811)
342610.Patl_3277(PF04820)
342610.Patl_3457PF01150
342610.Patl_2546(PF04820)
342610.Patl_2974(PF10576)
342610.Patl_2971(PF10576)
342610.Patl_2979(PF10576)not used
342610.Patl_0150(PF10013)not used
342610.Patl_1958(PF08695)
342610.Patl_4289(PF04820)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================