Metamenu

Effective results for Kordia algicida OT-1 (eggnog40)

Summary

Number of putative secreted proteins: 147
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 53 eukaryotic-like domains, contained in 147 proteins (32 high, 115 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391587.KAOT1_11301(PF03160) PF10577ER
391587.KAOT1_09134PF01030 PF10577ER
391587.KAOT1_10496(PF13905)(mitochondrial)
391587.KAOT1_17058(PF01852)ER
391587.KAOT1_10476(PF12388)ER
391587.KAOT1_09716(PF13688)ER
391587.KAOT1_08448PF13518(mitochondrial)
391587.KAOT1_15693PF13518(mitochondrial)
391587.KAOT1_17203(PF10569)(mitochondrial)
391587.KAOT1_05067PF01030ER
391587.KAOT1_01485PF13518(mitochondrial)
391587.KAOT1_09801PF00629ER
391587.KAOT1_09806PF00629ER
391587.KAOT1_06457(PF13905)ER
391587.KAOT1_13342(PF14312)ER
391587.KAOT1_05012(PF08487)ER
391587.KAOT1_03182(PF16313)ER
391587.KAOT1_08864(PF11028)ER
391587.KAOT1_06027(PF10988)mitochondrial; (mitochondrial)
391587.KAOT1_14437PF13518(mitochondrial)
391587.KAOT1_20012PF13518(mitochondrial)
391587.KAOT1_05137(PF16313)ER
391587.KAOT1_01494(PF10988)ER
391587.KAOT1_04175(PF08787)(mitochondrial)
391587.KAOT1_05747PF00629ER
391587.KAOT1_10946PF13518(mitochondrial)
391587.KAOT1_16273PF00629ER
391587.KAOT1_19957(PF08309)ER
391587.KAOT1_21317(PF10569)ER
391587.KAOT1_10726PF13518(mitochondrial)
391587.KAOT1_04160(PF08787)(ER)
391587.KAOT1_15097(PF13905)ER
391587.KAOT1_03822(PF02897)ER
391587.KAOT1_18847(PF04784)ER
391587.KAOT1_15668(PF02897)ER
391587.KAOT1_06942(PF12388)ER
391587.KAOT1_12702(PF10988)ER
391587.KAOT1_22441(PF01541)(mitochondrial)
391587.KAOT1_16258(PF02897)ER
391587.KAOT1_12237(PF05935)ER
391587.KAOT1_07553(PF10988)ER
391587.KAOT1_21587(PF05935)ER
391587.KAOT1_05952(PF15902)ER
391587.KAOT1_07313(PF13582)ER
391587.KAOT1_01794(PF15902)ER
391587.KAOT1_17833PF00629ER
391587.KAOT1_11291(PF08487)ER
391587.KAOT1_11562(PF12388)ER
391587.KAOT1_21612PF01030ER
391587.KAOT1_05092PF13518(mitochondrial)
391587.KAOT1_00925(PF02897)ER
391587.KAOT1_14077PF12550ER
391587.KAOT1_10191PF13518(mitochondrial)
391587.KAOT1_14182(PF04784)mitochondrial; (mitochondrial)
391587.KAOT1_04440(PF01541)(mitochondrial)
391587.KAOT1_19617(PF11028)ER
391587.KAOT1_17403(PF16889)mitochondrial
391587.KAOT1_09251(PF03575)ER
391587.KAOT1_16698(PF10988)ER
391587.KAOT1_14062PF03096ER
391587.KAOT1_14067(PF15902)ER
391587.KAOT1_03262(PF03412)mitochondrial
391587.KAOT1_10836PF13518(mitochondrial)
391587.KAOT1_05857PF01030ER
391587.KAOT1_00905(PF00965)ER
391587.KAOT1_04210(PF08787)ER
391587.KAOT1_03672(PF05257)ER
391587.KAOT1_18327PF13518(mitochondrial)
391587.KAOT1_09506PF13518(mitochondrial)
391587.KAOT1_09501(PF10988)ER
391587.KAOT1_01579(PF02897)ER
391587.KAOT1_04715PF08695ER
391587.KAOT1_17363(PF16889)(ER)
391587.KAOT1_02094PF13518(mitochondrial)
391587.KAOT1_18832(PF08309)ER
391587.KAOT1_09286(PF13905)ER
391587.KAOT1_18827(PF08309)ER
391587.KAOT1_18317(PF03412)ER
391587.KAOT1_08168(PF08487)ER
391587.KAOT1_03402(PF03412)(mitochondrial)
391587.KAOT1_20552(PF01541)(mitochondrial)
391587.KAOT1_02742(PF14938)plastid
391587.KAOT1_00520(PF13871) (PF13872)
391587.KAOT1_00200(PF13871) (PF13872)
391587.KAOT1_21292(PF03575)(mitochondrial)
391587.KAOT1_12447(PF12899)(mitochondrial)
391587.KAOT1_01350(PF05090)(mitochondrial)
391587.KAOT1_03847(PF13871) (PF13872)
391587.KAOT1_02712(PF05090)
391587.KAOT1_02652(PF16313)
391587.KAOT1_16558(PF05257)
391587.KAOT1_03962(PF05257)
391587.KAOT1_15518(PF05147)
391587.KAOT1_20582(PF08443)
391587.KAOT1_10646(PF01227)
391587.KAOT1_06672PF00332
391587.KAOT1_06677PF00332
391587.KAOT1_03717(PF03031)
391587.KAOT1_02977(PF01902)
391587.KAOT1_04295(PF01852)
391587.KAOT1_11537(PF01541)
391587.KAOT1_11712(PF00139)
391587.KAOT1_22416(PF01541)
391587.KAOT1_14922PF08695
391587.KAOT1_21557(PF10013)not used
391587.KAOT1_04170(PF08787)
391587.KAOT1_08188(PF03412)
391587.KAOT1_15648(PF08443)
391587.KAOT1_21956(PF03575)
391587.KAOT1_11146(PF08547)
391587.KAOT1_05757(PF06241)
391587.KAOT1_15723(PF05147)
391587.KAOT1_13827(PF05147)
391587.KAOT1_21482(PF01541)
391587.KAOT1_21572(PF10504)
391587.KAOT1_14627(PF01227)
391587.KAOT1_07838(PF08547)
391587.KAOT1_07833(PF14312)
391587.KAOT1_10631(PF00431)
391587.KAOT1_13542(PF03412)
391587.KAOT1_01784(PF07766)
391587.KAOT1_02687(PF02897)
391587.KAOT1_18947(PF05090)
391587.KAOT1_00305(PF05257)
391587.KAOT1_07032(PF08443)
391587.KAOT1_13282(PF13688)
391587.KAOT1_06212(PF03016)
391587.KAOT1_19592(PF03575)
391587.KAOT1_19597(PF08443)
391587.KAOT1_13677(PF09511)
391587.KAOT1_14862(PF03160)
391587.KAOT1_06682PF00332
391587.KAOT1_06512(PF01541)
391587.KAOT1_14857(PF01902)
391587.KAOT1_06692PF00332
391587.KAOT1_07002PF02750
391587.KAOT1_12872(PF14388)
391587.KAOT1_18032(PF15902)
391587.KAOT1_15558(PF03412)
391587.KAOT1_07113(PF05147)
391587.KAOT1_09196(PF01227)
391587.KAOT1_14037(PF08443)
391587.KAOT1_00635(PF05257)
391587.KAOT1_15788(PF01541)
391587.KAOT1_22636(PF03160)
391587.KAOT1_22631(PF03160)
391587.KAOT1_07708(PF01227)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================