Metamenu

Effective results for Clostridium cellulolyticum H10 (eggnog40)

Summary

Number of putative secreted proteins: 191
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 43 eukaryotic-like domains, contained in 191 proteins (82 high, 109 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
394503.Ccel_2320(PF02018) (PF00331) (PF00395) (PF06452)ER
394503.Ccel_2319(PF02018) (PF00331) (PF00395) (PF06452)ER
394503.Ccel_2011PF13276 PF00665mitochondrial
394503.Ccel_1240(PF03422) (PF03664)ER
394503.Ccel_3240(PF03442) (PF00395)ER
394503.Ccel_2199PF13276 PF00665mitochondrial
394503.Ccel_2392(PF02018) PF00759ER
394503.Ccel_1559PF13276 PF00665(mitochondrial)
394503.Ccel_0732(PF02018) PF00759ER
394503.Ccel_2949PF13276 PF00665mitochondrial
394503.Ccel_1230(PF03422) (PF00331)ER
394503.Ccel_1234(PF03422) (PF03664)ER
394503.Ccel_1238(PF02057) (PF03422)ER
394503.Ccel_2577(PF06165) (PF17167)ER
394503.Ccel_1484PF13276 PF00665mitochondrial
394503.Ccel_1829PF13276 PF00665mitochondrial
394503.Ccel_1823PF13276 PF00665(mitochondrial)
394503.Ccel_0843PF13276 (PF01527) PF00665(mitochondrial)
394503.Ccel_0993(PF00395) (PF06452)ER
394503.Ccel_0643(PF00395)ER
394503.Ccel_2621PF00759ER
394503.Ccel_2783(PF00395)ER
394503.Ccel_2489(PF00395)ER
394503.Ccel_0405PF13276 (PF01527) PF00665
394503.Ccel_1866(PF00457)ER
394503.Ccel_1666PF13276 (PF01527) PF00665
394503.Ccel_0428(PF00395)ER
394503.Ccel_2447(PF00395)ER
394503.Ccel_1241(PF03422)ER
394503.Ccel_1242(PF03422)ER
394503.Ccel_1249PF00759ER
394503.Ccel_1339(PF00395)ER
394503.Ccel_0204(PF02357)(ER)
394503.Ccel_3247(PF00395)ER
394503.Ccel_1884(PF01789)ER
394503.Ccel_0931(PF00331)ER
394503.Ccel_0750(PF00457)ER
394503.Ccel_0753PF00759ER
394503.Ccel_1656(PF03422)ER
394503.Ccel_3019(PF00395)ER
394503.Ccel_1648PF00759(ER); ER
394503.Ccel_1300PF13276 (PF01527) PF00665
394503.Ccel_3463(PF06452)ER
394503.Ccel_2226PF00759ER
394503.Ccel_0379(PF03442)ER
394503.Ccel_0275(PF00395)ER
394503.Ccel_1376(PF00395)ER
394503.Ccel_3446PF10250ER
394503.Ccel_2702PF13276 (PF01527) PF00665
394503.Ccel_0039(PF00395)ER
394503.Ccel_1543PF05735ER
394503.Ccel_1547(PF00395)ER
394503.Ccel_2393(PF00395)ER
394503.Ccel_3132(PF00395)ER
394503.Ccel_2178PF13276 (PF01527) PF00665
394503.Ccel_0824PF13276 (PF01527) PF00665
394503.Ccel_0731PF00759ER
394503.Ccel_0737PF00759ER
394503.Ccel_0734PF00759ER
394503.Ccel_0735PF00759(mitochondrial)
394503.Ccel_0231PF00759ER
394503.Ccel_1231(PF03422)ER
394503.Ccel_1232(PF03422)ER
394503.Ccel_1233(PF03422)ER
394503.Ccel_1235(PF03422)ER
394503.Ccel_1236(PF02018)ER
394503.Ccel_1237(PF03422)ER
394503.Ccel_1239(PF03422)ER
394503.Ccel_0839PF13276 (PF01527) PF00665
394503.Ccel_0728(PF03442)ER
394503.Ccel_0288(PF00395)(mitochondrial)
394503.Ccel_0289(PF00395)(mitochondrial)
394503.Ccel_2620PF13276 (PF01527) PF00665
394503.Ccel_3397(PF00395)ER
394503.Ccel_3399(PF00395)ER
394503.Ccel_1229(PF03422)ER
394503.Ccel_2361PF13276 (PF01527) PF00665
394503.Ccel_2365(PF00882)ER
394503.Ccel_2364(PF00395)ER
394503.Ccel_2633(PF00395)ER
394503.Ccel_0274(PF00395)ER
394503.Ccel_0278(PF00395)ER
394503.Ccel_2644(PF00395)ER
394503.Ccel_2643(PF00395)ER
394503.Ccel_1595PF13276 PF00665
394503.Ccel_1304(PF09359)(mitochondrial)
394503.Ccel_2972PF13551 PF00665
394503.Ccel_1479PF13551 PF00665
394503.Ccel_0409PF13551 PF00665
394503.Ccel_2666(PF05198) (PF00707)
394503.Ccel_1311(PF05198) (PF00707)
394503.Ccel_0220PF13551 PF00665
394503.Ccel_3221PF03727 PF00349
394503.Ccel_2676PF13551 PF00665
394503.Ccel_2671(PF12681)(mitochondrial)
394503.Ccel_2685PF13551 PF00665
394503.Ccel_0338PF13551 PF00665
394503.Ccel_0208PF13276 PF00665
394503.Ccel_1400PF13551 PF00665
394503.Ccel_2699PF13276 (PF01527)
394503.Ccel_2693PF13551 PF00665
394503.Ccel_2690PF13551 PF00665
394503.Ccel_1439(PF06165) (PF17167)
394503.Ccel_0919PF13551 PF00665
394503.Ccel_0586PF13551 PF00665
394503.Ccel_0589PF13551 PF00665
394503.Ccel_1163PF13276 PF00665
394503.Ccel_0905PF13276 PF00665
394503.Ccel_1378PF13276 PF00665
394503.Ccel_2889PF13551 PF00665
394503.Ccel_2154PF13276 PF00665
394503.Ccel_1573PF13276 PF00665
394503.Ccel_2708PF13551 PF00665
394503.Ccel_2149PF13551 PF00665
394503.Ccel_2551PF13551 PF00665
394503.Ccel_2553PF13551 PF00665
394503.Ccel_0823PF13551 PF00665
394503.Ccel_2619(PF05198) (PF00707)
394503.Ccel_3412(PF06165) (PF17167)
394503.Ccel_1832PF13551 PF00665
394503.Ccel_1838PF13551 PF00665
394503.Ccel_2371PF13276 PF00665
394503.Ccel_2977PF13551 PF00665
394503.Ccel_1220PF13551 PF00665
394503.Ccel_1821PF13551 PF00665
394503.Ccel_2961PF13551 PF00665
394503.Ccel_2109(PF06165) (PF17167)
394503.Ccel_1584PF13276 PF00665
394503.Ccel_1850PF13551 PF00665
394503.Ccel_2354(PF06165) (PF17167)
394503.Ccel_1209PF13276 PF00665
394503.Ccel_1596PF13518
394503.Ccel_2010(PF01527)
394503.Ccel_0893(PF02915)
394503.Ccel_2467(PF02256)
394503.Ccel_2669(PF06452)
394503.Ccel_2803(PF02415)
394503.Ccel_1869(PF02915)
394503.Ccel_1782(PF02915)
394503.Ccel_0307(PF02357)
394503.Ccel_2922(PF12831)
394503.Ccel_0207PF13518
394503.Ccel_1282(PF02475)
394503.Ccel_2869(PF02915)
394503.Ccel_2303(PF02256)
394503.Ccel_0755PF00759
394503.Ccel_0438(PF03063)
394503.Ccel_2694(PF01527)
394503.Ccel_2200(PF01527)
394503.Ccel_0749(PF03063)
394503.Ccel_3260(PF01947)
394503.Ccel_1424(PF03063)
394503.Ccel_1519(PF13884)
394503.Ccel_1515(PF13884)
394503.Ccel_1517(PF13884)
394503.Ccel_1636(PF02357)
394503.Ccel_1162PF13518
394503.Ccel_1168(PF02915)
394503.Ccel_0902(PF02915)
394503.Ccel_0904PF13518
394503.Ccel_1560(PF01527)
394503.Ccel_1628(PF08392)
394503.Ccel_1377PF13518
394503.Ccel_3444PF10250
394503.Ccel_0153(PF00331)
394503.Ccel_1994(PF14249)
394503.Ccel_2155PF13518
394503.Ccel_2232(PF02256)
394503.Ccel_1574PF13518
394503.Ccel_2144PF06268
394503.Ccel_0705(PF03630)
394503.Ccel_2950(PF01527)
394503.Ccel_0950(PF12831)
394503.Ccel_0951(PF12831)
394503.Ccel_2610(PF00882)
394503.Ccel_0949(PF12831)
394503.Ccel_0943(PF12831)
394503.Ccel_0942(PF12831)
394503.Ccel_2169(PF16760)
394503.Ccel_2372PF13518
394503.Ccel_1485(PF01527)
394503.Ccel_1828(PF01527)
394503.Ccel_1824(PF01527)
394503.Ccel_0849(PF02357)
394503.Ccel_0660(PF06777)
394503.Ccel_0662(PF09419)
394503.Ccel_1585PF13518
394503.Ccel_3377(PF12681)
394503.Ccel_1208PF13518
394503.Ccel_2918(PF03063)
394503.Ccel_0249(PF09359)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================