Effective results for Caulobacter segnis ATCC 21756 (eggnog40)
Summary
Number of putative secreted proteins: 203
- Predicted by T4SEpre: 78
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 146 proteins (1 high, 145 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 509190.Cseg_2423 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2427 | + | (PF16670) | ER | ||
| 509190.Cseg_2426 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_3921 | (PF00593) (PF07715) | mitochondrial | |||
| 509190.Cseg_1165 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_1181 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_3212 | (PF00593) (PF07715) | mitochondrial | |||
| 509190.Cseg_1483 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_1750 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_0591 | (PF00593) (PF07715) | (ER) | |||
| 509190.Cseg_2536 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2533 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2999 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2842 | + | (PF13202) | ER | ||
| 509190.Cseg_2844 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2258 | (PF00593) (PF07715) | mitochondrial; (mitochondrial) | |||
| 509190.Cseg_3483 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_3139 | (PF00593) (PF07715) | (ER) | |||
| 509190.Cseg_2476 | (PF00593) (PF07715) | ER; (ER) | |||
| 509190.Cseg_3276 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_3274 | (PF00593) (PF07715) | ER; mitochondrial | |||
| 509190.Cseg_3734 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_1725 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_3810 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_1272 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_0493 | (PF00593) (PF07715) | (ER) | |||
| 509190.Cseg_2381 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_1863 | (PF00593) (PF07715) | mitochondrial; plastid | |||
| 509190.Cseg_3823 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2390 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_3288 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_0475 | (PF00593) (PF07715) | mitochondrial | |||
| 509190.Cseg_3293 | (PF00593) (PF07715) | mitochondrial; ER | |||
| 509190.Cseg_3743 | (PF00593) (PF07715) | mitochondrial | |||
| 509190.Cseg_3740 | (PF00593) (PF07715) | (ER) | |||
| 509190.Cseg_1590 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_0468 | (PF00593) (PF07715) | ER; (ER) | |||
| 509190.Cseg_0463 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_0518 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2006 | (PF00593) (PF07715) | (mitochondrial) | |||
| 509190.Cseg_3190 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_1852 | + | (PF07715) | ER | ||
| 509190.Cseg_2032 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2747 | (PF10435) (PF13363) | ER | |||
| 509190.Cseg_2367 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2360 | (PF00593) (PF07715) | ER; (ER) | |||
| 509190.Cseg_3506 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_1826 | (PF00593) (PF07715) | (ER) | |||
| 509190.Cseg_1820 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2755 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2373 | (PF00593) (PF07715) | (ER); ER | |||
| 509190.Cseg_2376 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_3085 | (PF00593) (PF07715) | (ER) | |||
| 509190.Cseg_2979 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2562 | (PF00593) (PF07715) | mitochondrial; (mitochondrial) | |||
| 509190.Cseg_2761 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_2941 | (PF00593) (PF07715) | mitochondrial | |||
| 509190.Cseg_0043 | (PF00593) (PF07715) | (mitochondrial) | |||
| 509190.Cseg_0826 | (PF00593) (PF07715) | mitochondrial | |||
| 509190.Cseg_0227 | (PF00593) (PF07715) | mitochondrial | |||
| 509190.Cseg_3319 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_3421 | (PF00593) (PF07715) | mitochondrial | |||
| 509190.Cseg_3045 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_1815 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_3943 | (PF00593) (PF07715) | ER; (ER) | |||
| 509190.Cseg_0568 | (PF00593) (PF07715) | ER; (ER) | |||
| 509190.Cseg_1567 | (PF00593) (PF07715) | (ER) | |||
| 509190.Cseg_2094 | (PF00593) (PF07715) | mitochondrial; (mitochondrial) | |||
| 509190.Cseg_1779 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_3938 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_0481 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_0480 | (PF00593) (PF07715) | (mitochondrial) | |||
| 509190.Cseg_0482 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_0489 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_0571 | (PF00593) (PF07715) | ER | |||
| 509190.Cseg_1992 | (PF00593) (PF07715) | (ER) | |||
| 509190.Cseg_2880 | (PF01963) | mitochondrial; (mitochondrial) | |||
| 509190.Cseg_3682 | (PF01963) | ER | |||
| 509190.Cseg_3683 | (PF01963) | ER | |||
| 509190.Cseg_1370 | + | ER | |||
| 509190.Cseg_3442 | + | ER | |||
| 509190.Cseg_2456 | (PF00328) | mitochondrial | |||
| 509190.Cseg_0440 | (PF04577) | mitochondrial | |||
| 509190.Cseg_3075 | (PF10067) | ER | |||
| 509190.Cseg_0915 | (PF00593) (PF07715) | (plastid) | |||
| 509190.Cseg_3911 | + | ER | |||
| 509190.Cseg_1649 | + | ER | |||
| 509190.Cseg_2877 | (PF13202) | ER | |||
| 509190.Cseg_1344 | + | ER | |||
| 509190.Cseg_2758 | (PF07715) | ER | |||
| 509190.Cseg_1729 | (PF00593) (PF07715) | (ER) | |||
| 509190.Cseg_3812 | (PF03055) | (ER); ER | |||
| 509190.Cseg_1388 | (PF11911) | ER; (ER) | |||
| 509190.Cseg_3476 | + | ER | |||
| 509190.Cseg_1787 | (PF07715) | ER | |||
| 509190.Cseg_0240 | + | ER | |||
| 509190.Cseg_2700 | (PF13202) | ER | |||
| 509190.Cseg_1441 | + | ER | |||
| 509190.Cseg_1041 | (PF07715) | ER | |||
| 509190.Cseg_0897 | (PF12893) | ER | |||
| 509190.Cseg_0875 | (PF15979) | (ER) | |||
| 509190.Cseg_4086 | + | ER | |||
| 509190.Cseg_0880 | (PF12893) | ER | |||
| 509190.Cseg_0861 | (PF07715) | ER | |||
| 509190.Cseg_1847 | (PF00593) (PF07715) | (plastid) | |||
| 509190.Cseg_4210 | (PF01963) | ER | |||
| 509190.Cseg_4213 | + | mitochondrial | |||
| 509190.Cseg_2004 | + | ER | |||
| 509190.Cseg_2734 | (PF07715) | (ER) | |||
| 509190.Cseg_0677 | + | (mitochondrial) | |||
| 509190.Cseg_2730 | + | ER | |||
| 509190.Cseg_2023 | (PF00593) (PF07715) | (plastid) | |||
| 509190.Cseg_3575 | + | (mitochondrial); (plastid) | |||
| 509190.Cseg_1039 | + | ER | |||
| 509190.Cseg_0946 | (PF10067) | ER | |||
| 509190.Cseg_1940 | + | (mitochondrial); (plastid) | |||
| 509190.Cseg_1018 | (PF13202) | ER | |||
| 509190.Cseg_2768 | + | ER; (ER) | |||
| 509190.Cseg_2168 | + | (ER); ER | |||
| 509190.Cseg_3364 | (PF07715) | ER | |||
| 509190.Cseg_2410 | (PF00593) (PF07715) | (ER) | |||
| 509190.Cseg_2945 | + | ER | |||
| 509190.Cseg_1802 | + | ER | |||
| 509190.Cseg_3953 | PF16190 | (mitochondrial) | |||
| 509190.Cseg_1577 | (PF00593) | ER | |||
| 509190.Cseg_2957 | + | ER | |||
| 509190.Cseg_2407 | + | ER | |||
| 509190.Cseg_3135 | (PF15979) | ER | |||
| 509190.Cseg_3136 | (PF00328) | ER | |||
| 509190.Cseg_0967 | (PF07715) | (mitochondrial) | |||
| 509190.Cseg_2443 | (PF07715) | ER | |||
| 509190.Cseg_3307 | (PF07715) | ER | |||
| 509190.Cseg_3052 | + | ER | |||
| 509190.Cseg_0798 | (PF07715) | ER | |||
| 509190.Cseg_0791 | (PF01532) | mitochondrial | |||
| 509190.Cseg_0790 | (PF16387) | (ER); ER | |||
| 509190.Cseg_3931 | (PF07715) | ER | |||
| 509190.Cseg_0570 | (PF16670) | ER | |||
| 509190.Cseg_2085 | (PF02112) | ER | |||
| 509190.Cseg_1237 | (PF04577) | (mitochondrial) | |||
| 509190.Cseg_2455 | (PF00593) (PF07715) | ||||
| 509190.Cseg_0596 | (PF00593) (PF07715) | ||||
| 509190.Cseg_2770 | + | (plastid) | |||
| 509190.Cseg_2050 | (PF00593) (PF07715) | ||||
| 509190.Cseg_0119 | (PF12893) | (ER) | |||
| 509190.Cseg_0606 | + | (mitochondrial) | |||
| 509190.Cseg_3023 | (PF00593) (PF07715) | ||||
| 509190.Cseg_2016 | (PF00593) (PF07715) | ||||
| 509190.Cseg_1337 | (PF13202) | (plastid) | |||
| 509190.Cseg_3146 | (PF00593) (PF07715) | ||||
| 509190.Cseg_0829 | (PF00593) (PF07715) | ||||
| 509190.Cseg_2312 | (PF00593) (PF07715) | ||||
| 509190.Cseg_2969 | + | (mitochondrial) | |||
| 509190.Cseg_3590 | (PF03055) | ||||
| 509190.Cseg_3321 | + | ||||
| 509190.Cseg_2982 | (PF14330) | ||||
| 509190.Cseg_4078 | + | ||||
| 509190.Cseg_4064 | + | ||||
| 509190.Cseg_3489 | + | ||||
| 509190.Cseg_1740 | (PF03055) | ||||
| 509190.Cseg_1745 | (PF03055) | ||||
| 509190.Cseg_3875 | + | ||||
| 509190.Cseg_3491 | + | ||||
| 509190.Cseg_3042 | (PF01786) | ||||
| 509190.Cseg_1261 | + | ||||
| 509190.Cseg_1069 | + | ||||
| 509190.Cseg_3243 | + | ||||
| 509190.Cseg_4136 | (PF10013) | not used | |||
| 509190.Cseg_3814 | (PF10067) | ||||
| 509190.Cseg_1270 | (PF13202) | ||||
| 509190.Cseg_2706 | + | ||||
| 509190.Cseg_0133 | + | ||||
| 509190.Cseg_1716 | (PF03055) | ||||
| 509190.Cseg_0243 | + | ||||
| 509190.Cseg_0276 | + | ||||
| 509190.Cseg_3834 | (PF13202) | ||||
| 509190.Cseg_1908 | + | ||||
| 509190.Cseg_3298 | + | ||||
| 509190.Cseg_0937 | + | ||||
| 509190.Cseg_0506 | + | ||||
| 509190.Cseg_3292 | (PF13759) | ||||
| 509190.Cseg_3294 | (PF13661) | ||||
| 509190.Cseg_1113 | + | ||||
| 509190.Cseg_1934 | + | ||||
| 509190.Cseg_2139 | (PF04577) | ||||
| 509190.Cseg_3356 | + | ||||
| 509190.Cseg_0184 | + | ||||
| 509190.Cseg_0441 | (PF04577) | ||||
| 509190.Cseg_2750 | + | ||||
| 509190.Cseg_3086 | (PF11911) | ||||
| 509190.Cseg_3827 | + | ||||
| 509190.Cseg_1421 | + | ||||
| 509190.Cseg_1306 | + | ||||
| 509190.Cseg_2167 | + | ||||
| 509190.Cseg_0959 | (PF13759) | ||||
| 509190.Cseg_1573 | (PF10067) | ||||
| 509190.Cseg_0776 | + | ||||
| 509190.Cseg_2406 | (PF03055) | ||||
| 509190.Cseg_1561 | + | ||||
| 509190.Cseg_2898 | + | ||||
| 509190.Cseg_1514 | + | ||||
| 509190.Cseg_1356 | + | ||||
| 509190.Cseg_1221 | (PF13661) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.6 (6/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.6 (6/10 KEGG proteins)
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