Metamenu

Effective results for Geodermatophilus obscurus DSM 43160 (eggnog40)

Summary

Number of putative secreted proteins: 85
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 85 proteins (9 high, 76 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
526225.Gobs_4480(PF00163)(mitochondrial)
526225.Gobs_0016(PF13604)mitochondrial; (mitochondrial)
526225.Gobs_3474(PF13676)(mitochondrial)
526225.Gobs_1686PF14329ER
526225.Gobs_1680PF14329ER
526225.Gobs_4547(PF06455)ER
526225.Gobs_1802(PF06965)(ER)
526225.Gobs_0274(PF13641)ER
526225.Gobs_3539PF14329ER
526225.Gobs_3292(PF13641)mitochondrial; (mitochondrial)
526225.Gobs_2633(PF01373)ER
526225.Gobs_3482(PF13289)(mitochondrial)
526225.Gobs_1999(PF13359)(mitochondrial); plastid
526225.Gobs_2245(PF07478)mitochondrial
526225.Gobs_1742(PF02728) (PF01179)
526225.Gobs_2423(PF08326)(mitochondrial)
526225.Gobs_3643(PF03147) (PF01409)
526225.Gobs_1923(PF02728) (PF01179)
526225.Gobs_1724(PF05088)(ER)
526225.Gobs_2602(PF13359)(plastid)
526225.Gobs_4630(PF06965)(mitochondrial)
526225.Gobs_1159(PF13289)(plastid)
526225.Gobs_2243(PF09130)(ER)
526225.Gobs_1206(PF13359)(plastid)
526225.Gobs_4588PF08213not used
526225.Gobs_4321(PF13641)
526225.Gobs_4320(PF13641)
526225.Gobs_3449(PF13359)
526225.Gobs_1407(PF13676)
526225.Gobs_2500(PF03098)
526225.Gobs_4627(PF14336)
526225.Gobs_2658(PF13604)
526225.Gobs_1829(PF09265)
526225.Gobs_1683PF14329
526225.Gobs_4324(PF13641)
526225.Gobs_3786(PF09130)
526225.Gobs_0073(PF00614)
526225.Gobs_0266(PF00731)
526225.Gobs_1243(PF00102)
526225.Gobs_3409(PF13676)
526225.Gobs_3531(PF13359)
526225.Gobs_0696(PF13359)
526225.Gobs_4991(PF05088)
526225.Gobs_4354(PF00731)
526225.Gobs_2920(PF06965)
526225.Gobs_4221PF14329
526225.Gobs_3032(PF03147)
526225.Gobs_1862(PF13676)
526225.Gobs_3033(PF01409)
526225.Gobs_5017(PF07478)
526225.Gobs_1260(PF13676)
526225.Gobs_2917(PF13359)
526225.Gobs_0503(PF00614)
526225.Gobs_0434(PF13641)
526225.Gobs_1453(PF13604)
526225.Gobs_0858(PF13604)
526225.Gobs_2022(PF13604)
526225.Gobs_2974(PF13359)
526225.Gobs_0232(PF13641)
526225.Gobs_2962(PF06965)
526225.Gobs_3548(PF13359)
526225.Gobs_4230(PF02178)
526225.Gobs_0176(PF00163)
526225.Gobs_2820(PF13604)
526225.Gobs_2605(PF05088)
526225.Gobs_1560(PF00731)
526225.Gobs_4044(PF07478)
526225.Gobs_1155(PF13289)
526225.Gobs_4704(PF13641)
526225.Gobs_4454(PF09445)
526225.Gobs_3483(PF13676)
526225.Gobs_3820(PF13289)
526225.Gobs_0747(PF13604)
526225.Gobs_0746(PF13676)
526225.Gobs_1167(PF13676)
526225.Gobs_5088(PF07478)
526225.Gobs_1219(PF03098)
526225.Gobs_3451(PF13676)
526225.Gobs_0353(PF13641)
526225.Gobs_1998PF14329
526225.Gobs_1990PF14329
526225.Gobs_1994PF14329
526225.Gobs_2465(PF02945)
526225.Gobs_1518(PF13641)
526225.Gobs_0822(PF03098)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================