Metamenu

Effective results for Isosphaera pallida ATCC 43644 (eggnog40)

Summary

Number of putative secreted proteins: 161
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 36 eukaryotic-like domains, contained in 161 proteins (15 high, 146 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
575540.Isop_1348PF12765 (PF13646)ER
575540.Isop_0203(PF06439) (PF00432)ER
575540.Isop_0735(PF13646)(ER); (plastid)
575540.Isop_0606(PF06439)ER
575540.Isop_0575(PF08534)ER
575540.Isop_1806(PF03160)mitochondrial
575540.Isop_0721(PF13231)ER
575540.Isop_0614(PF08534)ER
575540.Isop_3719(PF14559)(mitochondrial)
575540.Isop_2611(PF06439)ER
575540.Isop_0758(PF12006)ER
575540.Isop_0375(PF14559)ER
575540.Isop_3064(PF07593)mitochondrial
575540.Isop_2831(PF08534)(ER); ER
575540.Isop_0566(PF13386)ER
575540.Isop_0362(PF13646)ER
575540.Isop_0414(PF13519)ER
575540.Isop_3059(PF09752)ER
575540.Isop_1907(PF06439)ER
575540.Isop_1220(PF06439)ER
575540.Isop_0314(PF08534)mitochondrial
575540.Isop_1912(PF13646)ER
575540.Isop_0958(PF14559)ER
575540.Isop_3216(PF06439)ER
575540.Isop_3033(PF08534)(ER)
575540.Isop_1967(PF07593)ER
575540.Isop_3538(PF00432)ER
575540.Isop_1379(PF13646)(ER)
575540.Isop_1975(PF13519)ER
575540.Isop_2174(PF06439)ER
575540.Isop_2777(PF07593)ER
575540.Isop_3542(PF13519)ER
575540.Isop_2017(PF13768)(mitochondrial)
575540.Isop_1412(PF13231)ER
575540.Isop_1414(PF08534)ER
575540.Isop_0147(PF13646)ER
575540.Isop_3305(PF05050)mitochondrial; (mitochondrial)
575540.Isop_2763(PF13231)mitochondrial
575540.Isop_1892(PF05050)mitochondrial
575540.Isop_2379(PF08534)ER
575540.Isop_0925(PF13231)(mitochondrial); plastid
575540.Isop_1317(PF03160)mitochondrial
575540.Isop_1531(PF13519)ER
575540.Isop_1408(PF03647)ER
575540.Isop_2682(PF03160)(mitochondrial)
575540.Isop_2689(PF05050)mitochondrial
575540.Isop_1952(PF00498)(mitochondrial); plastid
575540.Isop_2740(PF13519)ER; (ER)
575540.Isop_2745(PF13519)ER; (ER)
575540.Isop_1190(PF14559)ER
575540.Isop_0240(PF13768)(ER); (plastid)
575540.Isop_0246(PF13386)ER
575540.Isop_0247(PF06439)(ER)
575540.Isop_3345(PF13646)ER
575540.Isop_2651(PF14559)ER
575540.Isop_0391PF13516(ER)
575540.Isop_3358(PF14559)(ER)
575540.Isop_1668(PF04734)ER
575540.Isop_1380(PF04734)ER
575540.Isop_1471(PF00498)(mitochondrial)
575540.Isop_1476(PF06439)mitochondrial
575540.Isop_1872(PF14559)(ER)
575540.Isop_3656(PF06439)ER
575540.Isop_3423(PF00782)mitochondrial
575540.Isop_2049(PF00498)(plastid)
575540.Isop_3246(PF13429)(mitochondrial)
575540.Isop_3356(PF07593)(plastid)
575540.Isop_2026(PF08534)(plastid)
575540.Isop_2938(PF09861)plastid
575540.Isop_1191(PF07593)(mitochondrial)
575540.Isop_0804(PF00498)(ER)
575540.Isop_0385(PF13231)(ER)
575540.Isop_2287(PF12006)
575540.Isop_1485(PF13646)
575540.Isop_1735(PF13646)
575540.Isop_1646(PF04098)
575540.Isop_2859(PF14559)
575540.Isop_1253(PF14559)
575540.Isop_0507PF13516
575540.Isop_0611(PF08534)
575540.Isop_0344PF03162
575540.Isop_3678(PF06439)
575540.Isop_1931(PF00498)
575540.Isop_1111PF03162
575540.Isop_0757(PF06439)
575540.Isop_2595(PF00365)
575540.Isop_1932(PF08534)
575540.Isop_3476(PF09861)
575540.Isop_1341PF00179
575540.Isop_1562(PF13231)
575540.Isop_1168(PF05050)
575540.Isop_0747(PF00498)
575540.Isop_3699(PF16983)
575540.Isop_1830(PF16203)
575540.Isop_1571(PF01025)
575540.Isop_3196(PF13519)
575540.Isop_2530(PF00498)
575540.Isop_3199(PF13231)
575540.Isop_3688(PF14559)
575540.Isop_0425(PF02933)
575540.Isop_1548(PF13911)
575540.Isop_0090(PF00498)
575540.Isop_3326(PF13768)
575540.Isop_0435(PF00498)
575540.Isop_3535(PF13519)
575540.Isop_0942(PF14559)
575540.Isop_3208(PF00365)
575540.Isop_3545(PF14559)
575540.Isop_2304PF13516
575540.Isop_3233(PF00365)
575540.Isop_3308(PF13646)
575540.Isop_2788(PF13646)
575540.Isop_0211(PF14559)
575540.Isop_0212(PF14559)
575540.Isop_3550(PF00498)
575540.Isop_2970(PF00365)
575540.Isop_1085(PF10013)
575540.Isop_1533(PF13429)
575540.Isop_2575(PF13386)
575540.Isop_1953(PF00498)
575540.Isop_2195(PF00432)
575540.Isop_1432PF13516
575540.Isop_1433PF13516
575540.Isop_0125(PF14559)
575540.Isop_1181(PF00498)
575540.Isop_1614(PF03160)
575540.Isop_1504(PF13231)
575540.Isop_0050(PF13231)
575540.Isop_3576(PF05050)
575540.Isop_3571(PF13519)
575540.Isop_3570(PF13519)
575540.Isop_0901(PF00498)
575540.Isop_1339PF13516
575540.Isop_1423(PF04455)
575540.Isop_2420(PF05050)
575540.Isop_2421(PF11051)
575540.Isop_0482PF13516
575540.Isop_0487(PF00498)
575540.Isop_2736(PF13231)
575540.Isop_2737(PF13231)
575540.Isop_2646(PF00782)
575540.Isop_1996(PF13646)
575540.Isop_2238(PF14559)
575540.Isop_1679(PF00782)
575540.Isop_1077(PF00365)
575540.Isop_2247(PF09445)
575540.Isop_2248(PF14559)
575540.Isop_2393(PF16203)
575540.Isop_0390PF13516
575540.Isop_0392PF13516
575540.Isop_0004(PF09861)
575540.Isop_3130(PF03160)
575540.Isop_3138(PF01025)
575540.Isop_0537PF13516
575540.Isop_2712(PF14559)
575540.Isop_2667(PF10142)
575540.Isop_0250(PF09861)
575540.Isop_2872(PF00498)
575540.Isop_0389PF13516
575540.Isop_1018(PF01025)
575540.Isop_0835(PF13231)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================