Effective results for Prevotella sp. oral taxon 299 str. F0039 (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 41 proteins (8 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
575614.HMPREF0669_00384				(PF01715)	mitochondrial; (mitochondrial)
575614.HMPREF0669_01893				(PF03432)	(mitochondrial)
575614.HMPREF0669_01071				(PF03051)	ER
575614.HMPREF0669_00075				(PF03051)	ER
575614.HMPREF0669_00049				PF03644	(ER)
575614.HMPREF0669_01068				(PF00728)	ER
575614.HMPREF0669_00835				(PF00728)	ER
575614.HMPREF0669_00635				(PF03432)	(mitochondrial)
575614.HMPREF0669_00817				(PF00328)	ER
575614.HMPREF0669_00491				(PF01715)	(ER); (mitochondrial)
575614.HMPREF0669_00971				(PF00328)	ER
575614.HMPREF0669_00577				(PF00728)	ER
575614.HMPREF0669_01749				(PF00728)	ER
575614.HMPREF0669_00654				(PF00728)	ER
575614.HMPREF0669_00407				(PF09295)	ER
575614.HMPREF0669_00874				PF03644	ER
575614.HMPREF0669_00875				PF03644	ER
575614.HMPREF0669_00871				PF03644	ER
575614.HMPREF0669_00090				(PF03051)	ER
575614.HMPREF0669_01891				(PF13155) (PF01807)
575614.HMPREF0669_01824				(PF13155) (PF01807)
575614.HMPREF0669_01926				(PF13155) (PF01807)
575614.HMPREF0669_01061				(PF04991)
575614.HMPREF0669_00639				(PF13155)
575614.HMPREF0669_01192				(PF00728)
575614.HMPREF0669_00489				(PF02689)
575614.HMPREF0669_00177				PF03414
575614.HMPREF0669_01789				(PF03432)
575614.HMPREF0669_01826				(PF03432)
575614.HMPREF0669_01220				(PF01807)
575614.HMPREF0669_01360				(PF03432)
575614.HMPREF0669_01367				(PF03432)
575614.HMPREF0669_00561				(PF07653)
575614.HMPREF0669_00513				PF16269
575614.HMPREF0669_00612				(PF03432)
575614.HMPREF0669_01636				(PF03630)
575614.HMPREF0669_00650				(PF16011)
575614.HMPREF0669_00888				PF03644
575614.HMPREF0669_00887				PF03644
575614.HMPREF0669_00255				(PF04991)
575614.HMPREF0669_00709				(PF04991)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================