Metamenu

Effective results for Dickeya dadantii Ech703 (eggnog40)

Summary

Number of putative secreted proteins: 508
- Predicted by EffectiveT3: 170 (high confidence), 260 (low confidence)
- Predicted by EffectiveCCBD: 25 within, 12 before, 40 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 27 proteins (6 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
579405.Dd703_0366+(ER)
579405.Dd703_1556(>)(ER)
579405.Dd703_3534(PF13436)ER
579405.Dd703_2058(>)ER
579405.Dd703_3052(>)ER
579405.Dd703_3452(PF08975)ER
579405.Dd703_0185(PF01717)(mitochondrial)
579405.Dd703_0612(>)ER
579405.Dd703_0355(PF02931)ER
579405.Dd703_0352(PF00544)ER
579405.Dd703_0353(PF00544)ER
579405.Dd703_1001(+)+ER
579405.Dd703_3724+(mitochondrial)
579405.Dd703_1764+ER
579405.Dd703_0160+(mitochondrial)
579405.Dd703_1385(>)(ER)
579405.Dd703_2722(>)(ER)
579405.Dd703_1534+(mitochondrial); plastid
579405.Dd703_2764+(PF00544)(ER)
579405.Dd703_2763(+)(PF00544)mitochondrial
579405.Dd703_2165(+)(>)(mitochondrial)
579405.Dd703_3561+(<)plastid
579405.Dd703_2176(>)mitochondrial
579405.Dd703_3175(>)(mitochondrial)
579405.Dd703_0939(<)ER
579405.Dd703_2412+(mitochondrial)
579405.Dd703_4029+(mitochondrial); plastid
579405.Dd703_3117+(ER)
579405.Dd703_3334+ER
579405.Dd703_3937+mitochondrial; plastid
579405.Dd703_0824+(ER); (mitochondrial)
579405.Dd703_2034(>)ER
579405.Dd703_1130(>)ER
579405.Dd703_3814(>)(mitochondrial)
579405.Dd703_2681(>)(ER)
579405.Dd703_1125+(mitochondrial)
579405.Dd703_3578+(mitochondrial)
579405.Dd703_0308+(mitochondrial); plastid
579405.Dd703_0098+(ER)
579405.Dd703_2530(<)ER; (ER)
579405.Dd703_2002(>)(ER)
579405.Dd703_0261(>)ER
579405.Dd703_1221+ER; (ER)
579405.Dd703_2117++PF01644
579405.Dd703_1514(>)ER
579405.Dd703_0244(+)ER
579405.Dd703_0297(+)(mitochondrial)
579405.Dd703_3142(+)ER
579405.Dd703_1818+plastid
579405.Dd703_0656+(plastid)
579405.Dd703_2731(PF16485)(mitochondrial)
579405.Dd703_0518+(<)
579405.Dd703_0795(+)mitochondrial; (mitochondrial)
579405.Dd703_0979+(PF12588)
579405.Dd703_1554+plastid
579405.Dd703_1390(+)PF01644 (PF03142)
579405.Dd703_2458+(mitochondrial)
579405.Dd703_2631++
579405.Dd703_3723(+)ER
579405.Dd703_2842(+)(ER)
579405.Dd703_1543(+)(mitochondrial)
579405.Dd703_1641(+)(mitochondrial); (plastid)
579405.Dd703_1834+(plastid)
579405.Dd703_2670(+)ER
579405.Dd703_1527+(plastid)
579405.Dd703_3378(PF00544)plastid
579405.Dd703_3570(>)(mitochondrial)
579405.Dd703_0371+(>)
579405.Dd703_0395(+)(ER); (plastid)
579405.Dd703_1536+(plastid)
579405.Dd703_1530(+)(mitochondrial)
579405.Dd703_3140(+)(mitochondrial); (plastid)
579405.Dd703_0499+(plastid)
579405.Dd703_3442+(plastid)
579405.Dd703_1526+(plastid)
579405.Dd703_2742+ER
579405.Dd703_1540+(plastid)
579405.Dd703_1610(+)(mitochondrial)
579405.Dd703_2405(+)(mitochondrial)
579405.Dd703_3020(<)(ER)
579405.Dd703_2690(+)(ER)
579405.Dd703_1880(+)mitochondrial
579405.Dd703_2338(+)mitochondrial
579405.Dd703_0094++
579405.Dd703_3135(+)(mitochondrial)
579405.Dd703_3238(+)(mitochondrial)
579405.Dd703_3302+(<)
579405.Dd703_2418(+)ER
579405.Dd703_0896+(>)
579405.Dd703_1683(+)(>)(mitochondrial)
579405.Dd703_2812(+)ER
579405.Dd703_0838+plastid
579405.Dd703_3819+(plastid)
579405.Dd703_3472+(plastid)
579405.Dd703_3508(+)+PF01338
579405.Dd703_3509+PF01338
579405.Dd703_1235(+)(mitochondrial); (plastid)
579405.Dd703_1347+(mitochondrial)
579405.Dd703_0848(+)(mitochondrial)
579405.Dd703_2093+
579405.Dd703_2091+
579405.Dd703_0537+
579405.Dd703_0624+
579405.Dd703_1970(>)
579405.Dd703_2584+
579405.Dd703_2586+
579405.Dd703_2479+
579405.Dd703_2470(>)
579405.Dd703_2477(>)
579405.Dd703_2476+
579405.Dd703_2272+
579405.Dd703_3992(<)
579405.Dd703_0839+
579405.Dd703_0434(PF13551)
579405.Dd703_0292(>)
579405.Dd703_0299+
579405.Dd703_0982+
579405.Dd703_0961(>)
579405.Dd703_2490(+)(plastid)
579405.Dd703_1362+
579405.Dd703_2463(PF13551)
579405.Dd703_2912(PF01717)
579405.Dd703_2608+
579405.Dd703_2738+
579405.Dd703_1299+
579405.Dd703_3420+
579405.Dd703_3953+
579405.Dd703_0286+
579405.Dd703_0199(>)
579405.Dd703_1778(PF01717)
579405.Dd703_1488+
579405.Dd703_0775+
579405.Dd703_0976+
579405.Dd703_0974+
579405.Dd703_2857+
579405.Dd703_1394+not used
579405.Dd703_2928+
579405.Dd703_2926(PF01717)
579405.Dd703_2639+
579405.Dd703_1535+
579405.Dd703_0563(+)(>)
579405.Dd703_3092+
579405.Dd703_1768+
579405.Dd703_3942(>)
579405.Dd703_2903(>)
579405.Dd703_1549+
579405.Dd703_1545+
579405.Dd703_2930+
579405.Dd703_2933+
579405.Dd703_2935+
579405.Dd703_2936+
579405.Dd703_2443+
579405.Dd703_2629+
579405.Dd703_1208(+)(plastid)
579405.Dd703_3398(+)(mitochondrial)
579405.Dd703_1529+
579405.Dd703_0575+
579405.Dd703_3715+
579405.Dd703_3714+
579405.Dd703_1718+
579405.Dd703_1448+
579405.Dd703_2435+
579405.Dd703_2099+
579405.Dd703_3380+
579405.Dd703_3703+
579405.Dd703_3704+
579405.Dd703_1639+
579405.Dd703_0031(>)
579405.Dd703_2424(>)
579405.Dd703_2779+
579405.Dd703_2082+
579405.Dd703_3173+
579405.Dd703_3283(PF01717)
579405.Dd703_3773+
579405.Dd703_0010(+)(plastid)
579405.Dd703_3353+
579405.Dd703_3601+
579405.Dd703_3821+
579405.Dd703_0147+
579405.Dd703_0936(+)(mitochondrial)
579405.Dd703_0935(>)
579405.Dd703_0933+
579405.Dd703_0931(+)(PF06500)
579405.Dd703_1289(+)(>)
579405.Dd703_1049+
579405.Dd703_3987+
579405.Dd703_1468+
579405.Dd703_2343+
579405.Dd703_2341+
579405.Dd703_2983+
579405.Dd703_2984+
579405.Dd703_1334+
579405.Dd703_3160+
579405.Dd703_3295+
579405.Dd703_3905+
579405.Dd703_1611+
579405.Dd703_3831+
579405.Dd703_0837+
579405.Dd703_0833(+)(plastid)
579405.Dd703_0619+
579405.Dd703_1181+
579405.Dd703_4028+
579405.Dd703_1878+
579405.Dd703_2574(+)(mitochondrial)
579405.Dd703_2350(+)(mitochondrial)
579405.Dd703_2756+
579405.Dd703_2751(>)
579405.Dd703_2199+
579405.Dd703_2303+
579405.Dd703_0594+
579405.Dd703_0915(PF13551)
579405.Dd703_0917(+)(plastid)
579405.Dd703_0047+
579405.Dd703_1060+
579405.Dd703_2695(PF13551)
579405.Dd703_2697+
579405.Dd703_2699+not used
579405.Dd703_2219+
579405.Dd703_2212(+)(ER)
579405.Dd703_2033+
579405.Dd703_3107+
579405.Dd703_3100+
579405.Dd703_3746+
579405.Dd703_3326+
579405.Dd703_3926(+)plastid
579405.Dd703_3254(+)(mitochondrial)
579405.Dd703_0679+
579405.Dd703_0858+
579405.Dd703_0073+
579405.Dd703_1411(+)(plastid)
579405.Dd703_2685+
579405.Dd703_1898+
579405.Dd703_3923+
579405.Dd703_1891+
579405.Dd703_1304+
579405.Dd703_2518+
579405.Dd703_2208+
579405.Dd703_3482+
579405.Dd703_3481(+)(mitochondrial)
579405.Dd703_0112+
579405.Dd703_3267(+)(>)
579405.Dd703_0066+
579405.Dd703_0068+
579405.Dd703_1425+
579405.Dd703_1424(>)
579405.Dd703_2529+
579405.Dd703_2521+
579405.Dd703_1931+
579405.Dd703_2239+
579405.Dd703_2787(>)
579405.Dd703_2011(>)
579405.Dd703_2414+
579405.Dd703_0994+
579405.Dd703_1770+
579405.Dd703_0785+
579405.Dd703_0783+
579405.Dd703_0659(<)
579405.Dd703_0893+
579405.Dd703_0898+
579405.Dd703_1326+
579405.Dd703_1327+
579405.Dd703_2796+
579405.Dd703_2799+
579405.Dd703_2228+
579405.Dd703_2006+
579405.Dd703_2317(PF06500)
579405.Dd703_1740+
579405.Dd703_1539+
579405.Dd703_3689+
579405.Dd703_1435+
579405.Dd703_3511(+)PF01338
579405.Dd703_3510PF01338
579405.Dd703_3519+
579405.Dd703_0865+
579405.Dd703_0314(+)(plastid)
579405.Dd703_3347(<)
579405.Dd703_0887+
579405.Dd703_1682+
579405.Dd703_1351+
579405.Dd703_1910+
579405.Dd703_1500+
579405.Dd703_2495+
579405.Dd703_2077+
579405.Dd703_0058+
579405.Dd703_2673(<)
579405.Dd703_3046(+)+
579405.Dd703_3886(>)
579405.Dd703_3691(<)
579405.Dd703_1772(<)
579405.Dd703_0254+
579405.Dd703_1230+
579405.Dd703_0744+
579405.Dd703_1904+
579405.Dd703_2660+
579405.Dd703_2666+
579405.Dd703_1515+
579405.Dd703_3446+
579405.Dd703_3042+
579405.Dd703_1518+
579405.Dd703_1095(+)
579405.Dd703_1598(+)
579405.Dd703_1593(+)
579405.Dd703_1112(+)
579405.Dd703_0192(+)
579405.Dd703_2878(+)
579405.Dd703_1376(+)
579405.Dd703_1975(+)
579405.Dd703_1974(+)
579405.Dd703_2296(+)
579405.Dd703_2059(+)
579405.Dd703_0430(+)
579405.Dd703_3450(+)
579405.Dd703_3531(+)
579405.Dd703_1580(+)
579405.Dd703_0988(+)
579405.Dd703_0762(+)
579405.Dd703_1102(+)
579405.Dd703_1105(+)
579405.Dd703_2869(+)
579405.Dd703_1564(+)
579405.Dd703_2268(+)
579405.Dd703_2601(+)
579405.Dd703_1121(+)
579405.Dd703_3991(+)
579405.Dd703_3422(+)
579405.Dd703_0511(+)
579405.Dd703_0513(+)
579405.Dd703_3085(+)
579405.Dd703_0281(+)
579405.Dd703_0283(+)
579405.Dd703_0609(+)
579405.Dd703_1486(+)
579405.Dd703_0779(+)
579405.Dd703_2852(+)
579405.Dd703_0978(+)
579405.Dd703_3310(+)
579405.Dd703_1002(+)
579405.Dd703_2452(+)
579405.Dd703_0102(+)
579405.Dd703_3880(+)
579405.Dd703_3892(+)
579405.Dd703_0361(+)
579405.Dd703_3843(+)not used
579405.Dd703_1493(+)
579405.Dd703_1490(+)
579405.Dd703_0385(+)
579405.Dd703_3517(+)
579405.Dd703_2840(+)
579405.Dd703_0012(+)
579405.Dd703_1542(+)
579405.Dd703_1940(+)
579405.Dd703_0728(+)
579405.Dd703_2628(+)
579405.Dd703_2712(+)
579405.Dd703_0451(+)
579405.Dd703_2612(+)
579405.Dd703_3976(+)
579405.Dd703_3374(+)
579405.Dd703_0373(+)
579405.Dd703_3095(+)
579405.Dd703_0119(+)
579405.Dd703_2724(+)
579405.Dd703_0444(+)
579405.Dd703_2940(+)
579405.Dd703_2942(+)
579405.Dd703_1446(+)
579405.Dd703_2380(+)
579405.Dd703_1352(+)
579405.Dd703_2098(+)
579405.Dd703_2160(+)
579405.Dd703_3546(+)not used
579405.Dd703_3414(+)
579405.Dd703_0544(+)
579405.Dd703_3966(+)
579405.Dd703_1144(+)
579405.Dd703_1147(+)
579405.Dd703_0928(+)
579405.Dd703_0921(+)
579405.Dd703_0034(+)
579405.Dd703_0032(+)
579405.Dd703_4002(+)
579405.Dd703_1523(+)
579405.Dd703_1036(+)
579405.Dd703_2954(+)
579405.Dd703_2427(+)
579405.Dd703_1858(+)
579405.Dd703_2884(+)
579405.Dd703_2885(+)
579405.Dd703_2398(+)
579405.Dd703_1223(+)
579405.Dd703_1733(+)
579405.Dd703_1018(+)
579405.Dd703_0153(+)
579405.Dd703_3591(+)
579405.Dd703_0800(+)
579405.Dd703_0804(+)
579405.Dd703_1045(+)
579405.Dd703_3623(+)
579405.Dd703_0509(+)
579405.Dd703_0140(+)
579405.Dd703_2185(+)
579405.Dd703_3164(+)
579405.Dd703_2445(+)
579405.Dd703_2830(+)
579405.Dd703_2833(+)
579405.Dd703_3934(+)
579405.Dd703_3612(+)
579405.Dd703_1744(+)
579405.Dd703_0903(+)
579405.Dd703_0905(+)
579405.Dd703_1186(+)
579405.Dd703_0182(+)
579405.Dd703_2757(+)
579405.Dd703_3114(+)
579405.Dd703_2014(+)not used
579405.Dd703_3026(+)
579405.Dd703_3242(+)
579405.Dd703_0595(+)not used
579405.Dd703_0918(+)
579405.Dd703_1313(+)
579405.Dd703_2329(+)
579405.Dd703_2324(+)
579405.Dd703_0150(+)
579405.Dd703_0251(+)
579405.Dd703_0250(+)
579405.Dd703_1787(+)
579405.Dd703_3745(+)
579405.Dd703_3741(+)
579405.Dd703_0690(+)
579405.Dd703_3327(+)
579405.Dd703_3325(+)
579405.Dd703_0101(+)
579405.Dd703_0100(+)
579405.Dd703_1679(+)
579405.Dd703_3811(+)
579405.Dd703_0320(+)
579405.Dd703_1271(+)
579405.Dd703_1308(+)
579405.Dd703_1261(+)
579405.Dd703_2026(+)
579405.Dd703_3139(+)
579405.Dd703_1123(+)
579405.Dd703_0681(+)
579405.Dd703_3795(+)
579405.Dd703_3484(+)
579405.Dd703_3868(+)
579405.Dd703_3260(+)
579405.Dd703_0220(+)
579405.Dd703_1429(+)
579405.Dd703_1930(+)
579405.Dd703_1934(+)
579405.Dd703_3227(+)
579405.Dd703_3127(+)
579405.Dd703_0226(+)
579405.Dd703_3228(+)not used
579405.Dd703_3491(+)
579405.Dd703_3309(+)
579405.Dd703_3659(+)
579405.Dd703_0099(+)
579405.Dd703_1432(+)
579405.Dd703_2828(+)
579405.Dd703_2535(+)
579405.Dd703_2814(+)
579405.Dd703_1626(+)
579405.Dd703_0890(+)
579405.Dd703_2316(+)
579405.Dd703_2644(+)
579405.Dd703_3032(+)
579405.Dd703_3062(+)
579405.Dd703_0463(+)
579405.Dd703_3469(+)
579405.Dd703_3687(+)
579405.Dd703_0260(+)
579405.Dd703_0317(+)
579405.Dd703_3518(+)
579405.Dd703_0883(+)
579405.Dd703_1681(+)
579405.Dd703_1357(+)
579405.Dd703_2817(+)
579405.Dd703_4003(+)
579405.Dd703_2071(+)
579405.Dd703_3307(+)
579405.Dd703_3076(+)
579405.Dd703_3075(+)
579405.Dd703_3250(+)
579405.Dd703_0311(+)
579405.Dd703_0411(+)
579405.Dd703_2795(+)
579405.Dd703_3474(+)
579405.Dd703_0601(+)
579405.Dd703_3216(+)
579405.Dd703_0522(+)
579405.Dd703_2997(+)
579405.Dd703_3503(+)
579405.Dd703_0633(+)
579405.Dd703_0745(+)
579405.Dd703_2801(+)
579405.Dd703_0843(+)
579405.Dd703_1278(+)
579405.Dd703_0841(+)
579405.Dd703_2484(+)
579405.Dd703_2487(+)
579405.Dd703_0776(+)
579405.Dd703_2113(+)not used
579405.Dd703_3043(+)
579405.Dd703_2850(+)
579405.Dd703_2647(+)
579405.Dd703_3199(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.4 (4/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================