Metamenu

Effective results for Sphaerochaeta coccoides DSM 17374 (eggnog40)

Summary

Number of putative secreted proteins: 61
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 61 proteins (40 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
760011.Spico_0054PF00415 PF13540ER
760011.Spico_0051PF00415 PF13540ER
760011.Spico_0052PF00415 PF13540ER
760011.Spico_1852PF00415 PF13540ER
760011.Spico_1855PF00415 PF13540ER
760011.Spico_1298PF00415 PF13540ER
760011.Spico_0989PF00415 PF13540ER
760011.Spico_1063PF00415 PF13540ER
760011.Spico_1284PF00415 PF13540ER
760011.Spico_0231PF00415 PF13540ER
760011.Spico_1388PF00415 PF13540ER
760011.Spico_1397PF00415 PF13540ER
760011.Spico_1832PF00415 PF13540ER
760011.Spico_1525PF00415 PF13540ER
760011.Spico_1524PF00415 PF13540ER
760011.Spico_1753PF00415 PF13540ER
760011.Spico_1226PF00415 PF13540ER
760011.Spico_0949PF00415 PF03154ER
760011.Spico_1251PF00415 PF13540ER
760011.Spico_1802PF00415 PF13540ER
760011.Spico_0230PF00415ER
760011.Spico_0392(PF07247)(mitochondrial)
760011.Spico_0774(PF16011)ER
760011.Spico_1389PF00415ER
760011.Spico_0168PF00415ER
760011.Spico_1405PF00415ER
760011.Spico_1770PF00415ER
760011.Spico_1523PF00415ER
760011.Spico_0334PF00415ER
760011.Spico_0333PF00415ER
760011.Spico_0332PF00415ER
760011.Spico_0061PF00415ER
760011.Spico_0788PF00415ER
760011.Spico_0442PF00415 PF13540(mitochondrial)
760011.Spico_1246PF00415ER
760011.Spico_1464PF00415 PF13540
760011.Spico_1061PF03727 PF00349
760011.Spico_0239PF00415 PF13540
760011.Spico_1608PF00415 PF13540
760011.Spico_1733PF00415 PF13540
760011.Spico_1828(PF01195)(plastid)
760011.Spico_0060PF00415 PF13540
760011.Spico_0863(PF02844) (PF02843)
760011.Spico_1245(PF02844) (PF02843)
760011.Spico_0306(PF10974)
760011.Spico_1492(PF10458)
760011.Spico_0208(PF10974)
760011.Spico_0420(PF10458)
760011.Spico_0088(PF01234)
760011.Spico_0087(PF00162)
760011.Spico_1449PF00415
760011.Spico_1734(PF16889)
760011.Spico_1386(PF16889)
760011.Spico_0384(PF02057)
760011.Spico_0387(PF10458)
760011.Spico_0758(PF01991)
760011.Spico_0972(PF01195)
760011.Spico_0153(PF12646)
760011.Spico_1350(PF02475)
760011.Spico_1530(PF09224)
760011.Spico_0472(PF00162)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================