Effective results for Lacinutrix sp. 5H-3-7-4 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 32 proteins (4 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
983544.Lacal_1102				(PF00629) (PF05572)	ER
983544.Lacal_1161				(PF12483)	ER
983544.Lacal_0348				PF00431	ER
983544.Lacal_1982				(PF14240)	ER
983544.Lacal_1981				(PF14240)	ER
983544.Lacal_1753				(PF08787)	ER
983544.Lacal_1400				PF00431	ER
983544.Lacal_1747				(PF08787)	ER
983544.Lacal_0428				(PF05572)	ER
983544.Lacal_0634				(PF04784)	ER
983544.Lacal_2467				PF08017	ER
983544.Lacal_2062				(PF00629)	(mitochondrial)
983544.Lacal_1022				(PF03321)	mitochondrial; (mitochondrial)
983544.Lacal_0062				(PF00386)	ER
983544.Lacal_2207				(PF08787)	ER
983544.Lacal_1979				(PF00036)	(ER)
983544.Lacal_0763				(PF05572)	ER
983544.Lacal_0974				(PF01789)	ER
983544.Lacal_1422				(PF03321)	(plastid)
983544.Lacal_2458				(PF01679)	ER; not used
983544.Lacal_1653				(PF01679)	ER; not used
983544.Lacal_1898				(PF09537)
983544.Lacal_1745				(PF08787)
983544.Lacal_0622				(PF10504)
983544.Lacal_0640				(PF04784)
983544.Lacal_0648				(PF09537)
983544.Lacal_0075				(PF03321)
983544.Lacal_0844				(PF08695)
983544.Lacal_1952				(PF07766)
983544.Lacal_1308				(PF09537)
983544.Lacal_2164				(PF10013)	not used
983544.Lacal_0039				PF13405

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================