Metamenu

Effective results for Glaciecola sp. 4H-3-7+YE-5 (eggnog40)

Summary

Number of putative secreted proteins: 72
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 72 proteins (0 high, 72 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
983545.Glaag_1717(PF00924)ER
983545.Glaag_0599(PF00474)ER
983545.Glaag_2373(PF00924)ER
983545.Glaag_3961(PF00474)ER
983545.Glaag_3499(PF16757)ER
983545.Glaag_3495(PF00474)ER
983545.Glaag_3638(PF08787)ER
983545.Glaag_4125(PF00431)ER
983545.Glaag_0954(PF00924)ER
983545.Glaag_0601(PF00474)ER
983545.Glaag_1608(PF00474)ER
983545.Glaag_3730(PF04820)(ER); (mitochondrial)
983545.Glaag_0429(PF02112)ER
983545.Glaag_0426(PF00474)ER
983545.Glaag_3633(PF14592)ER
983545.Glaag_2805(PF14240)ER
983545.Glaag_1569(PF14240)ER
983545.Glaag_3291(PF00474)ER
983545.Glaag_3674(PF00474)(ER)
983545.Glaag_0171(PF00924)ER
983545.Glaag_4180(PF08662)ER
983545.Glaag_0771(PF00924)ER
983545.Glaag_3505(PF16757)ER; (ER)
983545.Glaag_2473(PF00474)ER
983545.Glaag_3478(PF00474)ER
983545.Glaag_3654(PF14592)ER
983545.Glaag_4049(PF00474)ER
983545.Glaag_0816(PF08787)ER; (ER)
983545.Glaag_2679(PF00474)ER
983545.Glaag_1076(PF04820)(ER)
983545.Glaag_4222(PF06119)ER; (ER)
983545.Glaag_4025(PF00474)ER
983545.Glaag_4020(PF00924)ER
983545.Glaag_0195(PF00924)(plastid)
983545.Glaag_2304(PF04820)(ER)
983545.Glaag_0521(PF01679)ER; not used
983545.Glaag_1806(PF14240)(mitochondrial)
983545.Glaag_0796(PF14240)(ER)
983545.Glaag_4018(PF01679)ER; not used
983545.Glaag_2423(PF00474)(ER)
983545.Glaag_2184(PF00924)
983545.Glaag_2297(PF08695)
983545.Glaag_1097(PF13621)
983545.Glaag_3632(PF08787)
983545.Glaag_4253(PF13621)
983545.Glaag_4254(PF04820)
983545.Glaag_3729(PF13621)
983545.Glaag_1283(PF09811)
983545.Glaag_1118(PF03102)
983545.Glaag_3530(PF04820)
983545.Glaag_3664(PF00924)
983545.Glaag_2828(PF13875)
983545.Glaag_2924(PF11017)
983545.Glaag_3525(PF04820)
983545.Glaag_3529(PF04820)
983545.Glaag_0767(PF00924)
983545.Glaag_0762(PF00924)
983545.Glaag_3676(PF04820)
983545.Glaag_0170(PF00924)
983545.Glaag_4062(PF11017)
983545.Glaag_1018(PF00924)
983545.Glaag_2305(PF04820)
983545.Glaag_2307(PF13621)
983545.Glaag_0231(PF00924)
983545.Glaag_2918(PF00924)
983545.Glaag_1258(PF03102)
983545.Glaag_1077(PF04820)
983545.Glaag_3783(PF07720)
983545.Glaag_1905(PF04820)
983545.Glaag_1274(PF03102)
983545.Glaag_2348(PF04820)
983545.Glaag_1519(PF02010)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================