Metamenu

Effective results for Thermosynechococcus elongatus BP-1 (eggnog40)

Summary

Number of putative secreted proteins: 175
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 106 eukaryotic-like domains, contained in 175 proteins (39 high, 136 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
197221.tlr1380(PF07282) PF12323(mitochondrial)
197221.tlr2032(PF07282) PF12323(mitochondrial)
197221.tlr0134(PF07282) PF12323mitochondrial; (mitochondrial)
197221.tll0687(PF07282) PF12323mitochondrial; (mitochondrial)
197221.tll2431(PF07282) PF12323mitochondrial; (mitochondrial)
197221.tlr1142(PF07282) PF12323(mitochondrial)
197221.tlr2238(PF07282) PF12323(mitochondrial)
197221.tlr0960(PF16639) (PF01333)ER
197221.tlr2322(PF07282) PF12323mitochondrial
197221.tlr1176(PF07282) PF12323(mitochondrial)
197221.tlr0401(PF07282) PF12323(mitochondrial)
197221.tlr0257(PF07282) PF12323(mitochondrial)
197221.tlr1113(PF07282) PF12323(mitochondrial)
197221.tlr0208(PF12049)(ER)
197221.tlr1128(PF00498)mitochondrial
197221.tll1109(PF11317)(ER); ER
197221.tll0168(PF00498)(mitochondrial); (plastid)
197221.tll1562(PF01947)(ER)
197221.tll2028(PF04278)ER
197221.tlr1249(PF04481)mitochondrial
197221.tll0156PF12323(mitochondrial)
197221.tll0792(PF11016)ER
197221.tsr0706(PF10716)ER
197221.tll2329(PF03652)(mitochondrial)
197221.tlr0707(PF11460)ER
197221.tlr0672(PF11805)(ER)
197221.tll1162(PF07282) PF12323(mitochondrial)
197221.tll1942PF13225ER
197221.tlr2175(PF04423)mitochondrial
197221.tlr1073(PF16166)(ER)
197221.tlr1208(PF11947)ER
197221.tsr2284(PF12159)ER
197221.tll0444(PF01716)ER
197221.tlr1844(PF00124)(mitochondrial)
197221.tlr0301(PF04839)(mitochondrial)
197221.tlr2411(PF02507)ER
197221.tsl0469PF12323(mitochondrial)
197221.tlr0372(PF07444)ER
197221.tll0660PF12483ER
197221.tll0016(PF03092)(ER)
197221.tsr1967(PF01737)ER
197221.tll2409(PF06514)ER
197221.tll0026(PF01169)ER
197221.tll2417(PF07282)mitochondrial
197221.tll1929(PF09366)mitochondrial; (plastid)
197221.tll2464(PF13326)ER
197221.tlr2075(PF01789)ER
197221.tll1487(PF00498)(mitochondrial); (plastid)
197221.tll0625(PF12046)ER
197221.tsr1840(PF11282)ER
197221.tsl0388PF12323(mitochondrial)
197221.tsl1386(PF00737)(mitochondrial)
197221.tll0748(PF03040)(mitochondrial)
197221.tlr2014(PF07444)ER; (ER)
197221.tlr1735(PF01169)ER
197221.tll0199PF12483ER
197221.tlr2399(PF07282) PF12323
197221.tlr1127(PF07282) PF12323
197221.tsl0176(PF02533)ER; not used
197221.tll1374(PF07282) PF12323
197221.tsl0836(PF06298)ER; not used
197221.tll0964(PF07282) PF12323
197221.tll2004(PF07282) PF12323
197221.tll0958(PF11267)(mitochondrial)
197221.tll0222(PF07282) PF12323
197221.tlr2199(PF07282) PF12323
197221.tsr1387(PF02468)ER; not used
197221.tlr2179(PF07282) PF12323
197221.tlr0273(PF07282) PF12323
197221.tll1329(PF00498)(mitochondrial)
197221.tlr2182(PF07282) PF12323
197221.tll1152(PF07282) PF12323
197221.tlr1444(PF11371)(mitochondrial)
197221.tsr2412(PF01701)ER; not used
197221.tll0205(PF07282) PF12323
197221.tlr2376(PF07282) PF12323
197221.tll1857(PF06485)(mitochondrial)
197221.tsr1544(PF01788)ER; not used
197221.tlr2316(PF01531)(mitochondrial)
197221.tlr1489(PF07282) PF12323
197221.tsr1542(PF00283)(ER); not used
197221.tsr1541(PF00284) (PF00283)
197221.tlr0406(PF07282) PF12323
197221.tsr2013(PF06596)ER; not used
197221.tlr0739(PF12617)(mitochondrial)
197221.tll0512(PF07282) PF12323
197221.tll0604(PF07282) PF12323
197221.tsl1837(PF11998)
197221.tll0944(PF00101)
197221.tlr1630(PF00124)
197221.tlr0651(PF03652)
197221.tlr1253(PF00498)
197221.tlr0472(PF11210)
197221.tll1488(PF00498)
197221.tll0507(PF04455)
197221.tll2024(PF05542)
197221.tlr1130(PF11909)
197221.tlr1134(PF11264)
197221.tsr1483(PF05421)
197221.tlr0455(PF00124)
197221.tll0640(PF04983)
197221.tll0155(PF07282)
197221.tsl2208(PF00504)
197221.tlr2348(PF11833)
197221.tsr1074(PF02532)not used
197221.tlr1477(PF00124)
197221.tlr0725(PF00498)
197221.tll1410(PF12095)
197221.tsl2479PF03742not used
197221.tsl2052(PF05151)not used
197221.tsr0446(PF00504)not used
197221.tsl1567(PF02427)
197221.tsr1531(PF01405)not used
197221.tll0315(PF11360)
197221.tlr1075(PF12600)
197221.tsr0877(PF02529)not used
197221.tsl2097(PF10999)
197221.tlr1986(PF06485)
197221.tlr1666(PF12204)
197221.tll1723(PF11378)
197221.tll0847(PF00498)
197221.tll0447(PF10664)
197221.tll0113(PF02943)
197221.tlr1843(PF00124)
197221.tlr2404(PF02605)
197221.tll0685(PF11152)
197221.tsl0017(PF11910)
197221.tlr0636(PF11623)
197221.tlr1235(PF00498)
197221.tsr2405(PF00796)not used
197221.tlr1047(PF00862)
197221.tsr1755(PF00504)not used
197221.tsl1517(PF02941)
197221.tll1623(PF00498)
197221.tlr0379(PF01169)
197221.tll1537(PF00498)
197221.tsl2428(PF11347)
197221.tll0468(PF07282)
197221.tlr2221(PF09353)
197221.tsr2277(PF10013)not used
197221.tsr1242(PF05969)not used
197221.tsr1416(PF08041)not used
197221.tlr1491(PF00498)
197221.tll1292(PF08847)
197221.tll1504(PF00101)
197221.tll1505(PF02341)
197221.tll0902(PF00498)
197221.tll2247PF00961
197221.tsl0117(PF11341)
197221.tll0641(PF04983)
197221.tll1867(PF12527)
197221.tll2410(PF00498)
197221.tlr1168(PF04483)
197221.tlr0732(PF00223)
197221.tsr1543PF02419not used
197221.tll1078(PF05542)
197221.tll0387(PF07282)
197221.tll1388(PF02392)
197221.tll1499(PF10674)
197221.tlr2323(PF12452)
197221.tlr0758(PF13355)
197221.tll1063(PF06799)
197221.tll1711(PF09366)
197221.tll0627(PF00498)
197221.tll2476(PF07082)
197221.tlr1437(PF10693)
197221.tll1724(PF02531)
197221.tll1831(PF00498)
197221.tll1340(PF00498)
197221.tlr2471(PF00498)
197221.tll2044(PF08855)
197221.tlr0731(PF00223)
197221.tll1357(PF16983)
197221.tll0994(PF01531)
197221.tlr1934(PF08853)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================