Metamenu

Effective results for Ruminiclostridium thermocellum ATCC 27405 (eggnog40)

Summary

Number of putative secreted proteins: 192
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 41 eukaryotic-like domains, contained in 192 proteins (70 high, 122 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
203119.Cthe_1838(PF02018) (PF00331)ER
203119.Cthe_0239(PF08757) (PF13287)ER
203119.Cthe_2160(PF08757) (PF13287)ER
203119.Cthe_1963(PF00331) (PF03422)ER
203119.Cthe_1221(PF06165) (PF17167)ER
203119.Cthe_0912(PF02018) (PF00331)ER
203119.Cthe_0412(PF02018) PF00759ER
203119.Cthe_0413(PF02018) PF00759ER
203119.Cthe_2590(PF02018) (PF00331)ER
203119.Cthe_2761PF00759ER
203119.Cthe_0040PF00759ER
203119.Cthe_0043PF00759ER
203119.Cthe_0044(PF08757)ER
203119.Cthe_1547(PF11070)ER
203119.Cthe_3141(PF03422)ER
203119.Cthe_0825PF00759ER
203119.Cthe_0821(PF00150)ER
203119.Cthe_1975PF00665 (PF13276) (PF01527)
203119.Cthe_2950(PF03422)ER
203119.Cthe_2952(PF01695)mitochondrial; (mitochondrial)
203119.Cthe_1686PF00665 (PF13276) (PF01527)
203119.Cthe_0366(PF01789)ER
203119.Cthe_0578PF00759ER
203119.Cthe_0797(PF00150)ER
203119.Cthe_2147(PF00150)ER
203119.Cthe_1682PF00665 (PF13276) (PF01527)
203119.Cthe_1992PF00665 (PF13276) (PF01527)
203119.Cthe_1996(PF01695)mitochondrial
203119.Cthe_0015(PF05270)ER
203119.Cthe_0744(PF16472)ER
203119.Cthe_0745PF00759ER
203119.Cthe_1691PF00665 (PF13276) (PF01527)
203119.Cthe_0585PF00665 (PF13276) (PF01527)
203119.Cthe_1506(PF06541)ER
203119.Cthe_0590PF00665 (PF13276) (PF01527)
203119.Cthe_0919PF00665 (PF13276) (PF01527)
203119.Cthe_0359(PF06541)ER
203119.Cthe_1405(PF08757)ER; (ER)
203119.Cthe_0433PF00759(ER); ER
203119.Cthe_2193(PF00150) (PF03422)(mitochondrial)
203119.Cthe_2194(PF03422)ER
203119.Cthe_2196(PF03422)ER
203119.Cthe_1257(PF02018)ER
203119.Cthe_0822(PF01695)mitochondrial
203119.Cthe_2772PF00665 (PF13276) (PF01527)
203119.Cthe_2872(PF00150)ER
203119.Cthe_3012(PF03422)ER
203119.Cthe_1880PF00665 (PF13276) (PF01527)
203119.Cthe_1886PF00665 (PF13276) (PF01527)
203119.Cthe_1656PF00665 (PF13276) (PF01527)
203119.Cthe_1271(PF03422)ER
203119.Cthe_1270(PF00079)ER
203119.Cthe_1273(PF05270)(mitochondrial)
203119.Cthe_2812PF00759ER
203119.Cthe_1472(PF00150)ER
203119.Cthe_0625PF00759ER
203119.Cthe_0624PF00759ER
203119.Cthe_0405(PF00150)ER
203119.Cthe_2809(PF02018)ER
203119.Cthe_0246(PF03422)ER
203119.Cthe_1911(PF03422)ER
203119.Cthe_1673PF00665 (PF13276) (PF01527)
203119.Cthe_1675PF00665 (PF13276) (PF01527)
203119.Cthe_0274PF00759ER
203119.Cthe_2012PF00665 (PF13276) (PF01527)
203119.Cthe_2000PF00665 (PF13276) (PF01527)
203119.Cthe_2139(PF05270)ER
203119.Cthe_2137(PF03422)(mitochondrial); (ER)
203119.Cthe_2135PF00665 (PF13276) (PF01527)
203119.Cthe_1851(PF06541)ER
203119.Cthe_0191(PF00079)ER
203119.Cthe_0190(PF00079)ER
203119.Cthe_0536(PF00150)ER
203119.Cthe_2972(PF03422)ER
203119.Cthe_0543PF00759ER
203119.Cthe_1496PF13936 PF00665
203119.Cthe_0304PF13936 PF00665
203119.Cthe_1206PF13936 PF00665
203119.Cthe_0148(PF00872)(mitochondrial)
203119.Cthe_0141PF13936 PF00665
203119.Cthe_2173PF13936 PF00665
203119.Cthe_0496PF13936 PF00665
203119.Cthe_3042PF04511(mitochondrial)
203119.Cthe_0159PF13936 PF00665
203119.Cthe_1684(PF01527) (PF13276)
203119.Cthe_1193(PF00872)(mitochondrial)
203119.Cthe_0801(PF00872)(mitochondrial)
203119.Cthe_3051(PF00872)(mitochondrial)
203119.Cthe_0970(PF00872)(mitochondrial)
203119.Cthe_1999PF13936 PF00665
203119.Cthe_0371(PF00872)(mitochondrial)
203119.Cthe_2153PF13936 PF00665
203119.Cthe_0588PF13936 PF00665
203119.Cthe_3208PF13936 PF00665
203119.Cthe_3207(PF00872)(mitochondrial)
203119.Cthe_2422(PF16472)(ER)
203119.Cthe_0342(PF02256) (PF02906)
203119.Cthe_0348PF13936 PF00665
203119.Cthe_2989(PF06165) (PF17167)
203119.Cthe_0879PF13936 PF00665
203119.Cthe_3216(PF00872)(mitochondrial)
203119.Cthe_2188PF13936 PF00665
203119.Cthe_1242PF13936 PF00665
203119.Cthe_0356(PF00872)(mitochondrial)
203119.Cthe_1533(PF00872)(mitochondrial)
203119.Cthe_0275(PF06165) (PF17167)
203119.Cthe_0430(PF02256) (PF02906)
203119.Cthe_2195(PF03422)(ER)
203119.Cthe_3003(PF02906) (PF02256)
203119.Cthe_2615(PF00275)(mitochondrial)
203119.Cthe_1392PF13936 PF00665
203119.Cthe_0128PF13936 PF00665
203119.Cthe_1469PF13936 PF00665
203119.Cthe_2671(PF00872)(mitochondrial)
203119.Cthe_2716PF13936 PF00665
203119.Cthe_2715PF13936 PF00665
203119.Cthe_1874(PF00872)(mitochondrial)
203119.Cthe_1901(PF00872)(mitochondrial)
203119.Cthe_0510PF13936 PF00665
203119.Cthe_2138(PF05270)plastid
203119.Cthe_0692PF13936 PF00665
203119.Cthe_0698PF13936 PF00665
203119.Cthe_0192PF13936 PF00665
203119.Cthe_3181PF13936 PF00665
203119.Cthe_3182PF13936 PF00665
203119.Cthe_2750(PF01695)(mitochondrial)
203119.Cthe_2114PF13936 PF00665
203119.Cthe_3086(PF00275)(mitochondrial)
203119.Cthe_2760PF00759
203119.Cthe_0944(PF04423)
203119.Cthe_1543(PF02938)
203119.Cthe_1797(PF00275)
203119.Cthe_0956PF16760
203119.Cthe_2958(PF00872)
203119.Cthe_1369(PF11969)
203119.Cthe_3043(PF13246)
203119.Cthe_2321(PF14311)
203119.Cthe_1174(PF02582)
203119.Cthe_1175(PF02582)
203119.Cthe_2328(PF00275)
203119.Cthe_0973(PF00275)
203119.Cthe_1991(PF00872)
203119.Cthe_0587(PF00872)
203119.Cthe_1180(PF17032)
203119.Cthe_2858(PF00872)
203119.Cthe_0594(PF00872)
203119.Cthe_1539(PF12437)
203119.Cthe_1407(PF09359)
203119.Cthe_2830(PF01695)
203119.Cthe_2199(PF01695)
203119.Cthe_2198PF00665
203119.Cthe_2418(PF01695)
203119.Cthe_0292(PF00872)
203119.Cthe_2294PF00665
203119.Cthe_0426(PF02906)
203119.Cthe_1889(PF00872)
203119.Cthe_1727(PF12224)
203119.Cthe_0634(PF16472)
203119.Cthe_2467(PF01695)
203119.Cthe_2264(PF01991)
203119.Cthe_2672(PF00872)
203119.Cthe_2816(PF00872)
203119.Cthe_1471(PF00150)
203119.Cthe_2807(PF00150)
203119.Cthe_0240(PF09359)
203119.Cthe_1917(PF13246)
203119.Cthe_1873PF00665
203119.Cthe_2832(PF00872)
203119.Cthe_2831PF00665
203119.Cthe_1454(PF17032)
203119.Cthe_2017(PF00872)
203119.Cthe_1116PF00665
203119.Cthe_0517(PF01527)
203119.Cthe_1331(PF02938)
203119.Cthe_0863(PF12437)
203119.Cthe_2829(PF00872)
203119.Cthe_1080PF16760
203119.Cthe_2005(PF01695)
203119.Cthe_2004PF00665
203119.Cthe_2295(PF01695)
203119.Cthe_2226(PF03031)
203119.Cthe_0855(PF09419)
203119.Cthe_0196(PF12437)
203119.Cthe_0441(PF00275)
203119.Cthe_1135(PF08357)
203119.Cthe_2360PF00759
203119.Cthe_3163PF16760
203119.Cthe_2751(PF16804)
203119.Cthe_0335(PF02906)
203119.Cthe_1635(PF12224)
203119.Cthe_2119(PF00331)
203119.Cthe_2201(PF00872)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================