Metamenu

Effective results for Synechococcus sp. PCC 7002 (eggnog40)

Summary

Number of putative secreted proteins: 139
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 116 eukaryotic-like domains, contained in 139 proteins (6 high, 133 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
32049.SYNPCC7002_A0974PF05641ER
32049.SYNPCC7002_A0888(PF05116) (PF00862)(ER)
32049.SYNPCC7002_A1598(PF04278)(ER)
32049.SYNPCC7002_A1752PF03815ER
32049.SYNPCC7002_A1963(PF03522)ER
32049.SYNPCC7002_A0160(PF16166)ER
32049.SYNPCC7002_A2729(PF11152)(ER)
32049.SYNPCC7002_A0774(PF07082)ER; (ER)
32049.SYNPCC7002_A0516(PF07444)ER
32049.SYNPCC7002_A1008(PF02507)ER
32049.SYNPCC7002_A2201(PF01094)ER
32049.SYNPCC7002_A0354(PF13355)(mitochondrial)
32049.SYNPCC7002_A1249(PF12159)ER; (ER)
32049.SYNPCC7002_A0322(PF06514)ER
32049.SYNPCC7002_A2094(PF11910)(mitochondrial)
32049.SYNPCC7002_A2400(PF11016)ER
32049.SYNPCC7002_A0499(PF12049)(ER)
32049.SYNPCC7002_A1303(PF01789)ER
32049.SYNPCC7002_A0269(PF01716)ER
32049.SYNPCC7002_A0679(PF08853)ER; (ER)
32049.SYNPCC7002_A1687(PF02325)(ER)
32049.SYNPCC7002_A2533(PF13326)ER
32049.SYNPCC7002_A0061(PF14622)(mitochondrial)
32049.SYNPCC7002_A1083PF03815ER
32049.SYNPCC7002_A2570(PF12617)(mitochondrial)
32049.SYNPCC7002_A0615(PF12452)(ER)
32049.SYNPCC7002_A1143(PF11909)(mitochondrial)
32049.SYNPCC7002_A2542(PF14622)(mitochondrial)
32049.SYNPCC7002_A0135(PF01737)ER
32049.SYNPCC7002_A1956(PF12046)(ER); ER
32049.SYNPCC7002_A1605PF05757ER
32049.SYNPCC7002_A0560(PF10716)ER
32049.SYNPCC7002_A0561(PF11460)ER; (ER)
32049.SYNPCC7002_A2129(PF02325)ER
32049.SYNPCC7002_A0981(PF05969)(ER); not used
32049.SYNPCC7002_A1910(PF16639) (PF01333)
32049.SYNPCC7002_A0199(PF02672)(mitochondrial)
32049.SYNPCC7002_A0230(PF00284) (PF00283)
32049.SYNPCC7002_A0231(PF00283)ER; not used
32049.SYNPCC7002_A0809(PF02468)ER; not used
32049.SYNPCC7002_A0643(PF02560)(mitochondrial)
32049.SYNPCC7002_A1426(PF10693)(ER)
32049.SYNPCC7002_A1093(PF02392)(plastid)
32049.SYNPCC7002_A2779(PF02533)(ER); not used
32049.SYNPCC7002_A0142(PF04483)(ER)
32049.SYNPCC7002_A0887(PF05116)
32049.SYNPCC7002_A1590(PF09366)
32049.SYNPCC7002_A2006(PF11360)
32049.SYNPCC7002_A0760(PF07444)
32049.SYNPCC7002_A1962(PF00223)
32049.SYNPCC7002_A1961(PF00223)
32049.SYNPCC7002_A0186(PF00504)not used
32049.SYNPCC7002_A1560(PF00124)
32049.SYNPCC7002_A2213(PF03130)
32049.SYNPCC7002_A2214(PF03130)
32049.SYNPCC7002_A0374(PF02529)not used
32049.SYNPCC7002_A0518(PF01947)
32049.SYNPCC7002_A1824(PF11947)
32049.SYNPCC7002_A1820(PF06485)
32049.SYNPCC7002_A1000(PF11965)
32049.SYNPCC7002_A1009(PF01701)not used
32049.SYNPCC7002_A1647(PF08847)
32049.SYNPCC7002_A2023(PF05116)
32049.SYNPCC7002_A2847(PF01477)
32049.SYNPCC7002_A1908(PF11267)
32049.SYNPCC7002_A1476(PF00504)
32049.SYNPCC7002_A1018(PF11965)
32049.SYNPCC7002_A1017(PF02171)
32049.SYNPCC7002_A1012(PF11317)
32049.SYNPCC7002_A1122(PF06485)
32049.SYNPCC7002_A0751(PF04839)
32049.SYNPCC7002_A1831(PF05542)
32049.SYNPCC7002_A0682(PF02531)
32049.SYNPCC7002_A1800(PF00101)
32049.SYNPCC7002_A1241(PF10063)
32049.SYNPCC7002_A1333(PF07787)
32049.SYNPCC7002_A1347(PF06298)not used
32049.SYNPCC7002_A0232PF02419not used
32049.SYNPCC7002_A1796(PF00101)
32049.SYNPCC7002_A1797(PF02341)
32049.SYNPCC7002_A2043(PF04983)
32049.SYNPCC7002_A2044(PF04983)
32049.SYNPCC7002_A2621(PF00796)not used
32049.SYNPCC7002_A0781(PF11282)
32049.SYNPCC7002_A1258(PF03912)
32049.SYNPCC7002_A2322(PF01744)
32049.SYNPCC7002_A1264(PF02672)
32049.SYNPCC7002_A1312(PF03912)
32049.SYNPCC7002_A0808(PF00737)
32049.SYNPCC7002_A2799(PF03040)
32049.SYNPCC7002_A2244(PF08855)
32049.SYNPCC7002_A0491(PF12600)
32049.SYNPCC7002_A0014(PF09353)
32049.SYNPCC7002_A0478PF02005
32049.SYNPCC7002_A0271(PF04455)
32049.SYNPCC7002_A0904(PF11210)
32049.SYNPCC7002_A0480(PF10999)
32049.SYNPCC7002_A0647(PF10184)
32049.SYNPCC7002_A1311(PF08041)not used
32049.SYNPCC7002_A0863(PF02560)
32049.SYNPCC7002_A0918(PF03982)
32049.SYNPCC7002_A2643(PF13911)
32049.SYNPCC7002_A2511(PF02941)
32049.SYNPCC7002_A2351(PF12204)
32049.SYNPCC7002_A0670(PF14249)
32049.SYNPCC7002_A1851(PF02943)
32049.SYNPCC7002_A1151(PF11371)
32049.SYNPCC7002_A0298(PF11623)not used
32049.SYNPCC7002_A0855(PF11347)
32049.SYNPCC7002_A2632(PF11805)
32049.SYNPCC7002_A2290(PF11378)
32049.SYNPCC7002_A2567(PF05421)
32049.SYNPCC7002_A2164(PF00124)
32049.SYNPCC7002_A2362(PF05542)
32049.SYNPCC7002_A2521(PF04481)
32049.SYNPCC7002_A0593(PF11998)
32049.SYNPCC7002_A0065(PF12095)
32049.SYNPCC7002_A0932(PF11833)
32049.SYNPCC7002_A2620(PF02605)
32049.SYNPCC7002_A2627(PF04423)
32049.SYNPCC7002_A1717(PF12527)
32049.SYNPCC7002_A2199(PF00124)
32049.SYNPCC7002_A1418(PF00124)
32049.SYNPCC7002_A1091(PF06799)
32049.SYNPCC7002_A0233(PF01788)not used
32049.SYNPCC7002_A0602(PF00504)
32049.SYNPCC7002_A0732(PF11264)
32049.SYNPCC7002_A1393(PF02427)
32049.SYNPCC7002_A0957(PF01405)not used
32049.SYNPCC7002_A2607(PF08417)
32049.SYNPCC7002_A2151(PF05151)not used
32049.SYNPCC7002_A2557(PF03092)
32049.SYNPCC7002_A0093(PF10674)
32049.SYNPCC7002_A1386(PF09366)
32049.SYNPCC7002_A0569(PF10664)
32049.SYNPCC7002_A1541(PF08854)
32049.SYNPCC7002_A2705(PF02325)
32049.SYNPCC7002_A1619(PF03130)
32049.SYNPCC7002_A0157(PF00124)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================