Metamenu

Effective results for Synechococcus sp. JA-2-3Ba(2-13) (eggnog40)

Summary

Number of putative secreted proteins: 205
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 102 eukaryotic-like domains, contained in 205 proteins (70 high, 135 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
321332.CYB_0530(PF12323) PF07282(mitochondrial)
321332.CYB_2174(PF12323) PF07282(mitochondrial)
321332.CYB_1621(PF16639) (PF01333)ER
321332.CYB_0018(PF12323) PF07282(mitochondrial)
321332.CYB_0026(PF12323) PF07282(mitochondrial); (plastid)
321332.CYB_1591PF07282mitochondrial
321332.CYB_0216(PF00124)(mitochondrial)
321332.CYB_2375(PF10716)ER
321332.CYB_2376(PF11460)ER
321332.CYB_0963(PF13326)ER
321332.CYB_2573(PF01947)(ER)
321332.CYB_2770(PF12159)ER
321332.CYB_2771(PF10693)(ER)
321332.CYB_2484(PF12323)(mitochondrial)
321332.CYB_1495(PF00284) (PF00283)(ER)
321332.CYB_0281(PF00421)(mitochondrial)
321332.CYB_0074(PF12323)(mitochondrial)
321332.CYB_2289(PF01169)ER
321332.CYB_2118(PF01169)ER
321332.CYB_0483(PF11016)ER
321332.CYB_0129(PF01789)(ER)
321332.CYB_0346(PF11317)ER
321332.CYB_1743(PF04481)(mitochondrial); (plastid)
321332.CYB_2626(PF12617)(mitochondrial); plastid
321332.CYB_2627(PF11909)(mitochondrial)
321332.CYB_0136(PF06514)(ER)
321332.CYB_0108(PF11152)(ER)
321332.CYB_2887(PF13371)(ER); ER
321332.CYB_1423(PF11805)(ER)
321332.CYB_1373(PF00737)(mitochondrial)
321332.CYB_1152(PF03092)(mitochondrial)
321332.CYB_2859(PF16166)(ER)
321332.CYB_1091(PF12323)(mitochondrial)
321332.CYB_0172(PF12483)(ER); (mitochondrial)
321332.CYB_1136PF05757ER
321332.CYB_0793(PF01457)mitochondrial
321332.CYB_1551(PF01716)ER
321332.CYB_2057(PF01737)ER
321332.CYB_1394(PF00226)mitochondrial; (mitochondrial)
321332.CYB_2546(PF03647)ER
321332.CYB_0098(PF11282)(ER)
321332.CYB_0149(PF00226)mitochondrial; (mitochondrial)
321332.CYB_2824(PF02507)ER
321332.CYB_2313(PF12323)(mitochondrial)
321332.CYB_0087PF07282(mitochondrial)
321332.CYB_2147PF07282(mitochondrial)
321332.CYB_2925(PF12323) PF07282
321332.CYB_1688PF07282(mitochondrial)
321332.CYB_0630PF07282(mitochondrial)
321332.CYB_1450PF07282(mitochondrial)
321332.CYB_0967(PF04278)(mitochondrial)
321332.CYB_2572(PF00226)plastid
321332.CYB_2485PF07282(mitochondrial)
321332.CYB_1463(PF02392)(plastid)
321332.CYB_1711(PF04839)(ER)
321332.CYB_1297PF07282(mitochondrial)
321332.CYB_0472PF07282(mitochondrial)
321332.CYB_1496(PF00283)(ER); not used
321332.CYB_1201PF07282(mitochondrial)
321332.CYB_0041PF07282(mitochondrial)
321332.CYB_0518(PF12323) PF07282
321332.CYB_1245(PF02427)(mitochondrial)
321332.CYB_1023PF07282(mitochondrial)
321332.CYB_0075PF07282(mitochondrial)
321332.CYB_1259PF07282(mitochondrial)
321332.CYB_0673(PF06298)ER; not used
321332.CYB_0814(PF12323) PF07282
321332.CYB_1722PF07282(mitochondrial)
321332.CYB_2117PF07282(mitochondrial)
321332.CYB_2735PF07282(mitochondrial)
321332.CYB_0247(PF12323) PF07282
321332.CYB_1826PF07282(mitochondrial)
321332.CYB_1759PF07282(mitochondrial)
321332.CYB_2707PF07282(mitochondrial)
321332.CYB_2714(PF12323) PF07282
321332.CYB_0353(PF12323) PF07282
321332.CYB_0104(PF02533)(ER); not used
321332.CYB_2266PF02605 (PF00421)
321332.CYB_2263(PF12323) PF07282
321332.CYB_2468PF07282(mitochondrial)
321332.CYB_0598PF07282(mitochondrial)
321332.CYB_1372(PF02468)ER; not used
321332.CYB_1151PF07282(mitochondrial)
321332.CYB_0979PF07282(mitochondrial)
321332.CYB_1794(PF00101)(plastid)
321332.CYB_2454PF07282(mitochondrial)
321332.CYB_2696(PF12323) PF07282
321332.CYB_1365(PF08695)(ER)
321332.CYB_1090PF07282(mitochondrial)
321332.CYB_2312PF07282(mitochondrial)
321332.CYB_2224PF07282(mitochondrial)
321332.CYB_2557PF07282
321332.CYB_0081PF07282
321332.CYB_0150(PF11341)
321332.CYB_0620PF07282
321332.CYB_0551(PF11998)
321332.CYB_2782(PF00226)
321332.CYB_2569(PF08855)
321332.CYB_2290(PF01169)
321332.CYB_0183(PF11947)
321332.CYB_1322PF07282
321332.CYB_1210PF07282
321332.CYB_1856(PF13371)
321332.CYB_1852(PF07082)
321332.CYB_0855(PF08041)not used
321332.CYB_0854(PF00124)
321332.CYB_0853(PF00421)
321332.CYB_1455(PF00226)
321332.CYB_2026PF07282
321332.CYB_2578(PF02341)
321332.CYB_2577(PF00101)
321332.CYB_0628(PF02941)
321332.CYB_2168(PF00226)
321332.CYB_0230(PF12471)
321332.CYB_1461(PF11378)
321332.CYB_2902(PF11347)
321332.CYB_2587(PF07958)
321332.CYB_2741(PF06206)
321332.CYB_1293(PF05711)
321332.CYB_0612(PF06206)
321332.CYB_0277(PF09353)
321332.CYB_1872PF07282
321332.CYB_1475(PF10013)
321332.CYB_1498(PF01788)not used
321332.CYB_1499PF02605
321332.CYB_1497PF02419not used
321332.CYB_2910PF07282
321332.CYB_0282(PF01405)not used
321332.CYB_1647(PF11833)
321332.CYB_1247(PF00504)not used
321332.CYB_1447(PF00504)
321332.CYB_1800(PF11910)
321332.CYB_1736(PF00124)
321332.CYB_1028(PF06206)
321332.CYB_0250(PF04455)
321332.CYB_2106(PF03130)
321332.CYB_2438(PF04983)
321332.CYB_2437(PF04983)
321332.CYB_0258PF07282
321332.CYB_1817(PF00226)
321332.CYB_0813(PF02943)
321332.CYB_0812(PF06596)not used
321332.CYB_0810(PF03040)
321332.CYB_2935(PF00226)
321332.CYB_2732(PF12046)
321332.CYB_2736(PF03130)
321332.CYB_1227PF07282
321332.CYB_2426(PF02529)not used
321332.CYB_2427(PF00226)
321332.CYB_1623(PF11267)
321332.CYB_1750(PF03652)
321332.CYB_2126PF07282
321332.CYB_2259(PF05969)not used
321332.CYB_2701PF07282
321332.CYB_2410PF07282
321332.CYB_2413(PF10184)
321332.CYB_0233PF07282
321332.CYB_0722(PF11623)
321332.CYB_1294(PF05711)
321332.CYB_1742PF07282
321332.CYB_2138(PF12527)
321332.CYB_0220(PF05421)
321332.CYB_0644(PF10664)
321332.CYB_0645(PF11210)
321332.CYB_1515(PF13371)
321332.CYB_1518(PF01744)
321332.CYB_1195PF07282
321332.CYB_1190(PF03130)
321332.CYB_1999(PF00504)
321332.CYB_1998(PF00504)
321332.CYB_2657PF07282
321332.CYB_0100(PF00226)
321332.CYB_0368(PF08847)
321332.CYB_1180(PF10999)
321332.CYB_0745(PF00226)
321332.CYB_1500(PF00796)not used
321332.CYB_2089(PF12049)
321332.CYB_1763(PF03652)
321332.CYB_2268(PF00421)
321332.CYB_0022(PF00223)
321332.CYB_0021(PF00223)
321332.CYB_0371(PF00124)
321332.CYB_2071PF07282
321332.CYB_2215(PF12095)
321332.CYB_2458(PF02532)not used
321332.CYB_2521PF07282
321332.CYB_0506(PF00504)not used
321332.CYB_0943(PF03130)
321332.CYB_0942(PF03130)
321332.CYB_1564(PF12204)
321332.CYB_2063(PF10674)
321332.CYB_2201(PF06799)
321332.CYB_2538PF07282
321332.CYB_1310(PF12600)
321332.CYB_1314(PF11360)
321332.CYB_1042PF07282
321332.CYB_2835PF07282
321332.CYB_0548PF07282
321332.CYB_2253(PF02531)
321332.CYB_0605(PF14249)
321332.CYB_0433(PF00124)
321332.CYB_0329PF07282
321332.CYB_1053PF07282
321332.CYB_2825(PF01701)not used
321332.CYB_2826PF02605

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================