Metamenu

Effective results for Clostridium scindens ATCC 35704 (eggnog40)

Summary

Number of putative secreted proteins: 162
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 42 eukaryotic-like domains, contained in 162 proteins (34 high, 128 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
411468.CLOSCI_00582(PF00239)mitochondrial
411468.CLOSCI_03155(PF02386)(mitochondrial)
411468.CLOSCI_03791(PF00209)ER; (ER)
411468.CLOSCI_03905(PF02386)ER
411468.CLOSCI_03328PF01695mitochondrial
411468.CLOSCI_03619(PF02386)ER
411468.CLOSCI_00907(PF00302)(ER)
411468.CLOSCI_02460(PF01555)(ER); ER
411468.CLOSCI_00721(PF02421)(mitochondrial)
411468.CLOSCI_00529PF06541ER
411468.CLOSCI_03641(PF02386)ER
411468.CLOSCI_00444PF06541ER
411468.CLOSCI_03062PF06541(mitochondrial)
411468.CLOSCI_00963(PF02386)(ER); ER
411468.CLOSCI_03558PF06541ER
411468.CLOSCI_02572PF01348(mitochondrial)
411468.CLOSCI_00223(PF08774)mitochondrial
411468.CLOSCI_02786(PF00239)(mitochondrial)
411468.CLOSCI_03379(PF12681)(mitochondrial)
411468.CLOSCI_02519(PF00370) (PF02782)
411468.CLOSCI_00680PF06541(plastid)
411468.CLOSCI_02189(PF02906) (PF02256)
411468.CLOSCI_01896(PF00370) (PF02782)
411468.CLOSCI_00850(PF00370) (PF02782)
411468.CLOSCI_02534(PF00370) (PF02782)
411468.CLOSCI_00821(PF00370) (PF02782)
411468.CLOSCI_02743(PF00370) (PF02782)
411468.CLOSCI_02527(PF00370) (PF02782)
411468.CLOSCI_02525(PF00370) (PF02782)
411468.CLOSCI_02529(PF00370) (PF02782)
411468.CLOSCI_02415(PF09458)(plastid)
411468.CLOSCI_01276(PF00209)(ER)
411468.CLOSCI_00803(PF00370) (PF02782)
411468.CLOSCI_03632(PF02906) (PF02256)
411468.CLOSCI_00816(PF00370) (PF02782)
411468.CLOSCI_01848(PF00370) (PF02782)
411468.CLOSCI_00820(PF00370) (PF02782)
411468.CLOSCI_00836(PF02421)(mitochondrial)
411468.CLOSCI_02841(PF00239)(mitochondrial)
411468.CLOSCI_02335(PF02906) (PF02256)
411468.CLOSCI_00358(PF00370) (PF02782)
411468.CLOSCI_03320PF01695(mitochondrial)
411468.CLOSCI_00980(PF01496)(mitochondrial)
411468.CLOSCI_02487(PF00370) (PF02782)
411468.CLOSCI_02482(PF00370) (PF02782)
411468.CLOSCI_02546(PF00209)(ER)
411468.CLOSCI_03835(PF00370) (PF02782)
411468.CLOSCI_01142(PF02938)
411468.CLOSCI_00237PF01695
411468.CLOSCI_00924(PF02421)
411468.CLOSCI_02772PF01695
411468.CLOSCI_02775(PF01969)
411468.CLOSCI_00105(PF00239)
411468.CLOSCI_02354PF04587
411468.CLOSCI_02424(PF01128)
411468.CLOSCI_00110(PF03432)
411468.CLOSCI_03013(PF12681)
411468.CLOSCI_03166(PF02938)
411468.CLOSCI_02766PF01695
411468.CLOSCI_02502(PF14249)
411468.CLOSCI_00217(PF01555)
411468.CLOSCI_01637(PF02127)
411468.CLOSCI_03906(PF02386)
411468.CLOSCI_00107PF01695
411468.CLOSCI_00100(PF01555)
411468.CLOSCI_00075(PF00239)
411468.CLOSCI_00269(PF05257)
411468.CLOSCI_01998(PF00239)
411468.CLOSCI_00249PF01695
411468.CLOSCI_00247(PF00239)
411468.CLOSCI_03102(PF00958)
411468.CLOSCI_03438(PF12345)
411468.CLOSCI_01059(PF01990)
411468.CLOSCI_01058(PF01991)
411468.CLOSCI_01057(PF16886)
411468.CLOSCI_01055(PF01813)
411468.CLOSCI_01472(PF08774)
411468.CLOSCI_00878(PF00239)
411468.CLOSCI_03942(PF01880)
411468.CLOSCI_03110(PF00209)
411468.CLOSCI_03635(PF02906)
411468.CLOSCI_03256(PF00239)
411468.CLOSCI_03255(PF00239)
411468.CLOSCI_02471PF01695
411468.CLOSCI_02380(PF00239)
411468.CLOSCI_01677(PF05257)
411468.CLOSCI_01811(PF01687)
411468.CLOSCI_00386(PF01969)
411468.CLOSCI_03625(PF02906)
411468.CLOSCI_00916(PF03432)
411468.CLOSCI_03406(PF00239)
411468.CLOSCI_03244(PF03432)
411468.CLOSCI_03245PF01348
411468.CLOSCI_03247(PF03432)
411468.CLOSCI_03718PF01695
411468.CLOSCI_02444PF01695
411468.CLOSCI_02447PF01695
411468.CLOSCI_01062(PF01992)
411468.CLOSCI_01061(PF01496)
411468.CLOSCI_00752(PF10974)
411468.CLOSCI_00751(PF10974)not used
411468.CLOSCI_03657PF04916
411468.CLOSCI_03651PF01695
411468.CLOSCI_03505(PF00958)
411468.CLOSCI_02051(PF01128)
411468.CLOSCI_02054(PF00239)
411468.CLOSCI_02451(PF02782)not used
411468.CLOSCI_02293PF06541
411468.CLOSCI_03890(PF01880)
411468.CLOSCI_01650(PF01416)
411468.CLOSCI_00299(PF01555)
411468.CLOSCI_02604(PF01555)
411468.CLOSCI_02603(PF01555)
411468.CLOSCI_03512PF04587
411468.CLOSCI_00440(PF02906)
411468.CLOSCI_03883(PF00302)
411468.CLOSCI_02850(PF12646)
411468.CLOSCI_02581(PF05257)
411468.CLOSCI_00183(PF00239)
411468.CLOSCI_00181(PF00239)
411468.CLOSCI_01587(PF00209)
411468.CLOSCI_00168PF16994
411468.CLOSCI_03191(PF16011)
411468.CLOSCI_00556(PF08774)
411468.CLOSCI_00234PF12873
411468.CLOSCI_03331(PF00302)
411468.CLOSCI_02136(PF01128)
411468.CLOSCI_02130(PF08357)
411468.CLOSCI_02557(PF00239)
411468.CLOSCI_01684(PF05257)
411468.CLOSCI_01592(PF01416)
411468.CLOSCI_00089PF01348
411468.CLOSCI_00088(PF03432)
411468.CLOSCI_00978(PF01991)
411468.CLOSCI_00972(PF01813)
411468.CLOSCI_00977(PF01992)
411468.CLOSCI_00976(PF01990)
411468.CLOSCI_00975(PF16886)
411468.CLOSCI_00799(PF00370)
411468.CLOSCI_02838(PF12345)not used
411468.CLOSCI_03231(PF01555)
411468.CLOSCI_03232(PF05257)
411468.CLOSCI_03307PF01695
411468.CLOSCI_01568(PF02127)
411468.CLOSCI_00090(PF03432)
411468.CLOSCI_00099(PF05257)
411468.CLOSCI_01303(PF01416)
411468.CLOSCI_01975PF01695
411468.CLOSCI_01417PF01695
411468.CLOSCI_00410(PF01687)
411468.CLOSCI_01948(PF00239)
411468.CLOSCI_02948(PF02906)
411468.CLOSCI_03556(PF02421)
411468.CLOSCI_03318PF01695
411468.CLOSCI_02794PF01695
411468.CLOSCI_03316PF01695
411468.CLOSCI_02374PF01695
411468.CLOSCI_02578(PF01555)
411468.CLOSCI_03496(PF02127)
411468.CLOSCI_02974PF01695
411468.CLOSCI_00136(PF00239)
411468.CLOSCI_02567(PF03432)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================