Metamenu

Effective results for Porphyromonas gingivalis ATCC 33277 (eggnog40)

Summary

Number of putative secreted proteins: 68
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 68 proteins (55 high, 13 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
431947.PGN_0637PF12812ER
431947.PGN_1450(PF01715)(mitochondrial)
431947.PGN_1160PF01609(ER)
431947.PGN_1619PF05598 PF01609
431947.PGN_0749PF05598 PF01609
431947.PGN_1110PF05598 PF01609
431947.PGN_1118PF05598 PF01609
431947.PGN_0644PF05598 PF01609
431947.PGN_1901PF05598 PF01609
431947.PGN_1633(PF07837) (PF02971)
431947.PGN_1751(PF13155) (PF01807)
431947.PGN_1284(PF13155) (PF01807)
431947.PGN_1727PF05598 PF01609
431947.PGN_1132PF05598 PF01609
431947.PGN_1420PF05598 PF01609
431947.PGN_0842PF05598 PF01609
431947.PGN_1957PF05598 PF01609
431947.PGN_1397PF05598 PF01609
431947.PGN_1644PF05598 PF01609
431947.PGN_0602PF05598 PF01609
431947.PGN_0605PF05598 PF01609
431947.PGN_1926PF05598 PF01609
431947.PGN_1077PF05598 PF01609
431947.PGN_0104PF05598 PF01609
431947.PGN_0918PF05598 PF01609
431947.PGN_1669PF05598 PF01609
431947.PGN_0057(PF13155) (PF01807)
431947.PGN_0834PF05598 PF01609
431947.PGN_1276PF05598 PF01609
431947.PGN_0587PF05598 PF01609
431947.PGN_0027PF05598 PF01609
431947.PGN_1191PF05598 PF01609
431947.PGN_0324PF05598 PF01609
431947.PGN_0923(PF13155) (PF01807)
431947.PGN_1216PF05598 PF01609
431947.PGN_1442PF05598 PF01609
431947.PGN_0210PF05598 PF01609
431947.PGN_1161PF05598 PF01609
431947.PGN_1433PF05598 PF01609
431947.PGN_0971PF05598 PF01609
431947.PGN_1319PF05598 PF01609
431947.PGN_1008PF01609(plastid)
431947.PGN_0575PF05598 PF01609
431947.PGN_0577PF05598 PF01609
431947.PGN_1177PF05598 PF01609
431947.PGN_0212PF05598 PF01609
431947.PGN_0218PF05598 PF01609
431947.PGN_0220PF01609
431947.PGN_1630(PF02178)
431947.PGN_1912PF01609
431947.PGN_1280PF05598
431947.PGN_1626(PF01715)
431947.PGN_2011(PF05970)
431947.PGN_1394PF01609
431947.PGN_0108PF05598
431947.PGN_0131PF05598
431947.PGN_0130PF01609
431947.PGN_0839PF01609
431947.PGN_1992(PF05970)
431947.PGN_0954PF01609
431947.PGN_1839PF05598
431947.PGN_1838PF01609
431947.PGN_1834(PF16314)
431947.PGN_1796(PF16095)
431947.PGN_1310(PF05693)
431947.PGN_0966PF05598
431947.PGN_0967PF01609
431947.PGN_0219PF05598

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================