Effective results for Alistipes putredinis DSM 17216 (eggnog40)

Summary

Number of putative secreted proteins: 28
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 28 proteins (5 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
445970.ALIPUT_00471				(PF13155)	mitochondrial; (mitochondrial)
445970.ALIPUT_01406				(PF12437)	(mitochondrial)
445970.ALIPUT_00772				(PF01030)	ER
445970.ALIPUT_01756				(PF01223)	ER
445970.ALIPUT_01817				(PF02544)	ER
445970.ALIPUT_02073				(PF13155)	mitochondrial; (mitochondrial)
445970.ALIPUT_00529				(PF01223)	ER
445970.ALIPUT_01145				(PF01223)	(plastid)
445970.ALIPUT_01903				(PF07837) (PF02971)
445970.ALIPUT_02344				(PF05693)
445970.ALIPUT_00662				(PF01223)
445970.ALIPUT_00472				(PF01348)
445970.ALIPUT_00601				(PF16314)
445970.ALIPUT_00857				(PF13155)
445970.ALIPUT_00715				(PF05686)
445970.ALIPUT_01608				PF14608
445970.ALIPUT_00941				(PF13155)
445970.ALIPUT_02587				(PF04383)
445970.ALIPUT_01404				(PF12437)
445970.ALIPUT_01639				PF12873
445970.ALIPUT_02072				(PF01348)
445970.ALIPUT_00978				(PF04383)
445970.ALIPUT_00693				PF12873
445970.ALIPUT_00691				(PF00302)	not used
445970.ALIPUT_00034				(PF00302)
445970.ALIPUT_01493				(PF00302)
445970.ALIPUT_00028				PF14608
445970.ALIPUT_00786				PF12873

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================