Metamenu

Effective results for Streptomyces griseoflavus Tu4000 (eggnog40)

Summary

Number of putative secreted proteins: 162
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 44 eukaryotic-like domains, contained in 162 proteins (1 high, 161 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
467200.SSRG_03322(PF17102) (PF17103)(mitochondrial)
467200.SSRG_03321(PF17102) (PF17103)mitochondrial
467200.SSRG_02064(PF08386)ER
467200.SSRG_02065(PF08386)mitochondrial
467200.SSRG_03239(PF01551)ER
467200.SSRG_00517(PF01595)ER
467200.SSRG_00518(PF01595)ER
467200.SSRG_00519(PF01595)ER
467200.SSRG_03030(PF01839)ER
467200.SSRG_01603(PF01670)ER
467200.SSRG_04771(PF08459)mitochondrial
467200.SSRG_04772(PF08459)(mitochondrial)
467200.SSRG_06149(PF14378)ER
467200.SSRG_00273(PF01670)mitochondrial
467200.SSRG_02496(PF00253)mitochondrial
467200.SSRG_00255(PF01551)mitochondrial; (mitochondrial)
467200.SSRG_05468(PF13653)mitochondrial
467200.SSRG_03992(PF07646)(mitochondrial)
467200.SSRG_05128(PF08022)ER
467200.SSRG_05690(PF03423)ER
467200.SSRG_05691(PF02806)(ER)
467200.SSRG_02139(PF01551)mitochondrial
467200.SSRG_04193(PF01839)(ER)
467200.SSRG_03560(PF03259)ER
467200.SSRG_05289(PF01595)ER
467200.SSRG_03618(PF01551)ER
467200.SSRG_04696(PF03747)(ER)
467200.SSRG_00520(PF01595)ER
467200.SSRG_02585(PF01551)ER
467200.SSRG_04514(PF02806)ER
467200.SSRG_04515(PF02806)mitochondrial
467200.SSRG_04241(PF01595)ER
467200.SSRG_05414(PF01595)ER
467200.SSRG_05415(PF01595)ER
467200.SSRG_05956(PF16483)ER; mitochondrial
467200.SSRG_05438(PF08386)(ER)
467200.SSRG_05890(PF16483)(ER)
467200.SSRG_03536(PF01551)mitochondrial
467200.SSRG_03457(PF01839)(mitochondrial)
467200.SSRG_01174(PF17048)(ER); ER
467200.SSRG_02141(PF14378)ER
467200.SSRG_05516(PF03211)ER
467200.SSRG_05290(PF01595)ER
467200.SSRG_01508(PF03747)(ER)
467200.SSRG_02974(PF01551)ER
467200.SSRG_01082(PF09346)mitochondrial; (mitochondrial)
467200.SSRG_02256(PF03029)(ER)
467200.SSRG_02258(PF03259)(ER)
467200.SSRG_04299(PF10435) (PF13363)
467200.SSRG_01817(PF02806)(mitochondrial)
467200.SSRG_03542(PF01551)(mitochondrial)
467200.SSRG_04697(PF03747)(mitochondrial)
467200.SSRG_00115(PF01839)(mitochondrial)
467200.SSRG_06235(PF09234)(plastid)
467200.SSRG_04957(PF03747)(ER)
467200.SSRG_02359(PF01839)plastid
467200.SSRG_06307(PF03959)(plastid)
467200.SSRG_06300(PF01154) (PF08540)
467200.SSRG_00987(PF01154) (PF08540)
467200.SSRG_00619(PF01551)(ER)
467200.SSRG_01483(PF01551)(mitochondrial)
467200.SSRG_01136(PF03029)
467200.SSRG_04508(PF14378)
467200.SSRG_00295(PF03029)
467200.SSRG_00293(PF03259)
467200.SSRG_01965(PF03259)
467200.SSRG_01963(PF03029)
467200.SSRG_01584(PF04760)not used
467200.SSRG_01585(PF04760)
467200.SSRG_04847(PF03211)
467200.SSRG_04014(PF14378)
467200.SSRG_00950(PF07702)
467200.SSRG_02084(PF05076)
467200.SSRG_00724(PF03639)
467200.SSRG_04251(PF01234)
467200.SSRG_03166(PF00643)
467200.SSRG_05404(PF07702)
467200.SSRG_04115(PF07702)not used
467200.SSRG_01421(PF00253)
467200.SSRG_05140(PF05147)
467200.SSRG_05142(PF05076)
467200.SSRG_04638(PF00070)
467200.SSRG_04420(PF03029)
467200.SSRG_00439(PF02806)
467200.SSRG_05481(PF03259)
467200.SSRG_02286(PF04760)
467200.SSRG_04999(PF07702)
467200.SSRG_02137(PF07702)
467200.SSRG_02451(PF09445)
467200.SSRG_00014(PF05076)
467200.SSRG_00179(PF01551)
467200.SSRG_04386(PF14378)
467200.SSRG_03564(PF07702)
467200.SSRG_01708(PF03259)
467200.SSRG_00151PF00241
467200.SSRG_04418(PF03259)
467200.SSRG_01134(PF03259)
467200.SSRG_06257(PF05147)
467200.SSRG_03619(PF03747)
467200.SSRG_06272(PF03639)
467200.SSRG_04695(PF03747)
467200.SSRG_00852(PF03747)
467200.SSRG_01306(PF01903)
467200.SSRG_00685(PF05147)
467200.SSRG_03266(PF07702)
467200.SSRG_03268(PF07702)
467200.SSRG_03652(PF09234)
467200.SSRG_03653(PF07702)
467200.SSRG_02243(PF09346)
467200.SSRG_05642(PF07702)
467200.SSRG_04284(PF01903)
467200.SSRG_01018(PF01014)
467200.SSRG_01013(PF01014)
467200.SSRG_01388(PF08386)
467200.SSRG_01386(PF08386)
467200.SSRG_02841(PF08386)
467200.SSRG_03717(PF07702)
467200.SSRG_02549(PF07702)
467200.SSRG_04871(PF01903)
467200.SSRG_00926(PF01551)
467200.SSRG_00549(PF13246)
467200.SSRG_03366(PF01551)
467200.SSRG_02564(PF09346)
467200.SSRG_03751(PF09346)
467200.SSRG_00671(PF01896)
467200.SSRG_01113(PF01903)
467200.SSRG_01803(PF07702)not used
467200.SSRG_01802(PF07702)
467200.SSRG_00986(PF11468)
467200.SSRG_01177(PF08386)
467200.SSRG_00613(PF03029)
467200.SSRG_00615(PF03259)
467200.SSRG_03558(PF03029)
467200.SSRG_02932(PF07702)
467200.SSRG_02934(PF07702)
467200.SSRG_01714(PF03029)
467200.SSRG_01710(PF03029)
467200.SSRG_01712(PF03259)
467200.SSRG_00146(PF03747)
467200.SSRG_02959(PF00314)
467200.SSRG_05728(PF01551)
467200.SSRG_00124(PF05147)
467200.SSRG_00128(PF09234)
467200.SSRG_01292(PF07702)
467200.SSRG_02409(PF01551)
467200.SSRG_06242(PF00253)
467200.SSRG_00822(PF01896)
467200.SSRG_01085(PF09346)
467200.SSRG_03029(PF01839)
467200.SSRG_00043(PF03029)
467200.SSRG_00041(PF03259)
467200.SSRG_05080(PF03259)
467200.SSRG_05082(PF03029)
467200.SSRG_05318(PF03259)
467200.SSRG_05321(PF03029)
467200.SSRG_02784(PF01551)
467200.SSRG_06207(PF07702)
467200.SSRG_02008(PF07702)
467200.SSRG_03274(PF07702)
467200.SSRG_00313(PF13246)not used
467200.SSRG_01236(PF09346)
467200.SSRG_01150(PF08022)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================