Metamenu

Effective results for Raphidiopsis brookii D9 (eggnog40)

Summary

Number of putative secreted proteins: 140
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 102 eukaryotic-like domains, contained in 140 proteins (4 high, 136 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
533247.CRD_00850(PF04998) (PF04983)mitochondrial
533247.CRD_01684(PF16639) (PF01333)(mitochondrial)
533247.CRD_02263(PF11016)ER
533247.CRD_02472(PF11947)(ER); (mitochondrial)
533247.CRD_01871(PF10716)ER
533247.CRD_01383(PF13326)ER
533247.CRD_00711(PF05419)ER
533247.CRD_02827(PF12046)ER
533247.CRD_02658(PF11805)ER; (ER)
533247.CRD_01872(PF11460)ER
533247.CRD_03011(PF11152)ER
533247.CRD_01863(PF01169)(ER)
533247.CRD_01256(PF00515)ER
533247.CRD_01988(PF13355)(ER)
533247.CRD_00588(PF04839)ER
533247.CRD_00929(PF10693)(ER)
533247.CRD_00928(PF12159)ER
533247.CRD_01329(PF01169)ER
533247.CRD_02769(PF04481)mitochondrial
533247.CRD_01330(PF01169)(ER)
533247.CRD_00120(PF07247)(mitochondrial)
533247.CRD_02374(PF04278)(ER)
533247.CRD_00893(PF00515)(ER)
533247.CRD_02414(PF07250)ER
533247.CRD_01045(PF01737)ER
533247.CRD_00972(PF02507)ER
533247.CRD_02222(PF06514)(ER)
533247.CRD_02548(PF01789)mitochondrial; (mitochondrial)
533247.CRD_02683(PF01094)ER
533247.CRD_01006(PF07444)ER
533247.CRD_01592(PF01716)ER
533247.CRD_02717(PF02468)ER; not used
533247.CRD_02254(PF10999)(mitochondrial)
533247.CRD_00282(PF07478)(mitochondrial)
533247.CRD_01466(PF11965) (PF02514)
533247.CRD_01696(PF09366)plastid
533247.CRD_02176(PF07478)(mitochondrial)
533247.CRD_02973(PF16166)(ER)
533247.CRD_01818(PF06298)ER; not used
533247.CRD_02543(PF04483)(plastid)
533247.CRD_02309(PF12617)(mitochondrial)
533247.CRD_02050(PF00515)(mitochondrial)
533247.CRD_00758(PF02514)(ER)
533247.CRD_00247(PF00515) (PF05419)
533247.CRD_01915(PF12049)
533247.CRD_02911(PF01947)
533247.CRD_02860(PF00101)
533247.CRD_02489(PF07444)
533247.CRD_01618(PF04455)
533247.CRD_02264(PF12095)
533247.CRD_01431(PF05542)
533247.CRD_00251(PF02672)
533247.CRD_02718(PF00737)
533247.CRD_02490(PF06596)not used
533247.CRD_01606(PF12204)
533247.CRD_03050(PF09366)
533247.CRD_00646(PF02514)
533247.CRD_00647(PF11965)
533247.CRD_02274(PF07478)
533247.CRD_01427(PF08847)
533247.CRD_01425(PF12452)
533247.CRD_00395(PF02672)
533247.CRD_00262(PF01936)
533247.CRD_00263(PF01936)
533247.CRD_02012(PF02533)not used
533247.CRD_01708(PF12600)
533247.CRD_01411(PF06799)
533247.CRD_00073(PF00284)
533247.CRD_00072(PF01788)not used
533247.CRD_01384(PF14159)
533247.CRD_01135(PF00223)
533247.CRD_01134(PF00223)
533247.CRD_01132(PF06485)
533247.CRD_01624(PF02427)
533247.CRD_00270PF10229
533247.CRD_00660(PF02514)
533247.CRD_02389(PF14249)
533247.CRD_00283(PF11910)
533247.CRD_02531(PF11833)
533247.CRD_02821(PF11264)
533247.CRD_00917(PF10184)
533247.CRD_01471(PF12527)
533247.CRD_01472(PF03652)
533247.CRD_01084(PF06485)
533247.CRD_01460(PF01936)
533247.CRD_02296(PF08855)
533247.CRD_02815(PF11623)
533247.CRD_00614(PF16565)
533247.CRD_01452(PF07478)
533247.CRD_00034(PF00515)
533247.CRD_02171(PF01936)
533247.CRD_01851(PF11347)
533247.CRD_02612(PF05419)
533247.CRD_00851(PF04998)
533247.CRD_02985(PF14159)
533247.CRD_01326(PF05969)not used
533247.CRD_03034(PF07082)
533247.CRD_01190(PF11341)
533247.CRD_01534PF00151
533247.CRD_01991(PF00515)
533247.CRD_02571(PF02531)
533247.CRD_01333(PF01936)
533247.CRD_02400(PF00515)
533247.CRD_00637(PF02341)
533247.CRD_00636(PF00101)
533247.CRD_00849(PF04983)
533247.CRD_00011(PF05419)
533247.CRD_00830(PF03982)
533247.CRD_00492(PF11282)
533247.CRD_02899(PF10664)
533247.CRD_02896(PF11371)
533247.CRD_02895PF11909not used
533247.CRD_02894PF11909
533247.CRD_01308(PF09353)
533247.CRD_01040(PF11360)
533247.CRD_02362(PF03040)
533247.CRD_01552(PF02941)
533247.CRD_00371(PF11317)
533247.CRD_00970(PF02605)
533247.CRD_00971(PF01701)not used
533247.CRD_00977(PF08041)not used
533247.CRD_02951(PF00515)
533247.CRD_01036(PF00515)
533247.CRD_01786(PF11378)
533247.CRD_00211(PF10674)
533247.CRD_02043(PF03092)
533247.CRD_02045(PF02943)
533247.CRD_01368(PF11998)
533247.CRD_01365(PF08854)
533247.CRD_01025(PF02392)
533247.CRD_02305(PF00515)
533247.CRD_01577(PF11210)
533247.CRD_01973(PF08853)
533247.CRD_01166(PF03040)
533247.CRD_00769(PF05419)
533247.CRD_00507(PF00101)
533247.CRD_00437(PF05542)
533247.CRD_02219(PF03652)
533247.CRD_00245(PF00515)
533247.CRD_00246(PF00515)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================