Metamenu

Effective results for Prevotella buccae D17 (eggnog40)

Summary

Number of putative secreted proteins: 50
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 50 proteins (2 high, 48 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
575611.HMPREF0649_00516(PF15979)ER
575611.HMPREF0649_01643(PF00079)ER
575611.HMPREF0649_00672(PF02929)ER
575611.HMPREF0649_02508(PF00328)ER
575611.HMPREF0649_00861(PF15979)(mitochondrial)
575611.HMPREF0649_01501(PF05448)ER
575611.HMPREF0649_00933(PF05448)ER
575611.HMPREF0649_01371(PF00328)ER
575611.HMPREF0649_01373(PF05686)(mitochondrial)
575611.HMPREF0649_01401(PF16338)ER
575611.HMPREF0649_01887(PF01715)mitochondrial; (mitochondrial)
575611.HMPREF0649_00200(PF03092)ER
575611.HMPREF0649_00978(PF02929)ER
575611.HMPREF0649_01939(PF03432)mitochondrial; (mitochondrial)
575611.HMPREF0649_01216(PF02689)mitochondrial; (mitochondrial)
575611.HMPREF0649_01595PF12812ER
575611.HMPREF0649_01836(PF15979)(plastid)
575611.HMPREF0649_01396(PF01807) (PF13155)
575611.HMPREF0649_02070(PF16338)(plastid)
575611.HMPREF0649_00934(PF16338)(ER)
575611.HMPREF0649_00115(PF01807) (PF13155)
575611.HMPREF0649_01973(PF01807) (PF13155)
575611.HMPREF0649_00684(PF02929)(ER)
575611.HMPREF0649_01941(PF01807) (PF13155)
575611.HMPREF0649_01218(PF01715)(plastid)
575611.HMPREF0649_01052(PF01807) (PF13155)
575611.HMPREF0649_00992(PF05448)
575611.HMPREF0649_00993(PF05448)
575611.HMPREF0649_01805(PF01697)
575611.HMPREF0649_00199PF16269
575611.HMPREF0649_01656(PF16314)
575611.HMPREF0649_02284(PF03432)
575611.HMPREF0649_02095(PF01121)
575611.HMPREF0649_00928(PF02929)
575611.HMPREF0649_01034(PF03432)
575611.HMPREF0649_01970(PF03432)
575611.HMPREF0649_01405(PF03432)
575611.HMPREF0649_01408(PF13155)
575611.HMPREF0649_02052(PF13086)
575611.HMPREF0649_00688(PF02929)not used
575611.HMPREF0649_01429(PF13155)
575611.HMPREF0649_01946(PF13086)not used
575611.HMPREF0649_01237(PF03630)
575611.HMPREF0649_01783(PF03432)
575611.HMPREF0649_02231(PF01121)
575611.HMPREF0649_00943(PF13086)
575611.HMPREF0649_01853(PF13155)
575611.HMPREF0649_02422(PF05693)
575611.HMPREF0649_00626(PF00079)
575611.HMPREF0649_01464(PF03432)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================