Effective results for Hydrogenobacter thermophilus TK-6 (eggnog40)
Summary
Number of putative secreted proteins: 619
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 204 eukaryotic-like domains, contained in 619 proteins (77 high, 542 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 608538.Hydth_0858 | (PF10385) (PF04563) (PF04560) (PF04565) (PF00562) | (mitochondrial) | |||
| 608538.HTH_0858 | (PF10385) (PF04563) (PF04560) (PF04565) (PF00562) | (mitochondrial) | |||
| 608538.HTH_0857 | (PF04998) (PF04983) (PF04997) (PF05000) (PF00623) | ||||
| 608538.Hydth_0857 | (PF04998) (PF04983) (PF04997) (PF05000) (PF00623) | ||||
| 608538.HTH_1789 | (PF00662) (PF00361) | ER | |||
| 608538.Hydth_1093 | (PF00662) (PF00361) | ER | |||
| 608538.Hydth_0941 | (PF00116) (PF02790) | ER | |||
| 608538.Hydth_1168 | (PF01138) (PF00013) (PF03726) (PF03725) | ||||
| 608538.Hydth_0358 | (PF02844) (PF02843) | (mitochondrial) | |||
| 608538.Hydth_1771 | (PF00662) (PF00361) | ER | |||
| 608538.HTH_1101 | (PF00662) (PF00361) | ER | |||
| 608538.HTH_1176 | (PF01138) (PF00013) (PF03726) (PF03725) | ||||
| 608538.HTH_0360 | (PF02844) (PF02843) | (mitochondrial) | |||
| 608538.HTH_0945 | (PF00116) (PF02790) | ER | |||
| 608538.Hydth_0848 | (PF03947) (PF00181) | (mitochondrial) | |||
| 608538.Hydth_1466 | (PF00116) (PF02790) | ER | |||
| 608538.HTH_1478 | (PF00116) (PF02790) | ER | |||
| 608538.Hydth_0210 | (PF13597) (PF03477) | (mitochondrial) | |||
| 608538.HTH_0410 | (PF00662) (PF00361) | ER | |||
| 608538.Hydth_0409 | (PF00662) (PF00361) | ER | |||
| 608538.HTH_0211 | (PF13597) (PF03477) | (mitochondrial) | |||
| 608538.HTH_0848 | (PF03947) (PF00181) | (mitochondrial) | |||
| 608538.HTH_0092 | (PF01058) | (mitochondrial) | |||
| 608538.HTH_1783 | (PF02635) | ER | |||
| 608538.HTH_1787 | (PF00361) | ER | |||
| 608538.HTH_1788 | (PF00361) | ER | |||
| 608538.Hydth_1555 | (PF00595) | ER | |||
| 608538.Hydth_1145 | (PF00361) | ER | |||
| 608538.Hydth_1147 | (PF01058) | (mitochondrial) | |||
| 608538.Hydth_0407 | (PF00499) | ER | |||
| 608538.Hydth_1700 | (PF09459) | ER | |||
| 608538.HTH_0080 | (PF02635) | ER | |||
| 608538.HTH_0861 | PF00687 | (mitochondrial); mitochondrial | |||
| 608538.Hydth_0280 | (PF00115) | ER | |||
| 608538.Hydth_1886 | (PF01171) | mitochondrial | |||
| 608538.Hydth_0573 | PF00071 | mitochondrial | |||
| 608538.HTH_0413 | (PF00507) | ER | |||
| 608538.HTH_0412 | (PF00361) | (ER) | |||
| 608538.HTH_0415 | (PF00146) | ER | |||
| 608538.Hydth_1400 | (PF00507) | ER | |||
| 608538.Hydth_0972 | (PF00430) | ER | |||
| 608538.HTH_1239 | (PF00115) | ER | |||
| 608538.HTH_1232 | (PF13664) | ER | |||
| 608538.HTH_0321 | (PF02620) | mitochondrial | |||
| 608538.HTH_1904 | (PF01171) | mitochondrial | |||
| 608538.Hydth_0960 | (PF01121) | mitochondrial | |||
| 608538.Hydth_0296 | (PF01746) | ER | |||
| 608538.Hydth_1186 | (PF02630) | ER | |||
| 608538.HTH_0408 | (PF00499) | ER | |||
| 608538.Hydth_1443 | (PF06418) | (ER) | |||
| 608538.Hydth_1765 | (PF02635) | ER | |||
| 608538.Hydth_1769 | (PF00361) | ER | |||
| 608538.Hydth_0965 | (PF07650) | (mitochondrial) | |||
| 608538.Hydth_1210 | (PF01632) | (mitochondrial) | |||
| 608538.HTH_0431 | (PF13177) | mitochondrial; (mitochondrial) | |||
| 608538.Hydth_1773 | (PF00499) | ER | |||
| 608538.Hydth_1770 | (PF00361) | ER | |||
| 608538.HTH_0503 | (PF02416) | ER | |||
| 608538.HTH_0504 | (PF02416) | ER | |||
| 608538.HTH_0298 | (PF01746) | ER | |||
| 608538.HTH_1218 | (PF01632) | (mitochondrial) | |||
| 608538.Hydth_1518 | (PF04187) | ER | |||
| 608538.HTH_0969 | (PF07650) | (mitochondrial) | |||
| 608538.HTH_0964 | (PF01121) | mitochondrial | |||
| 608538.HTH_1363 | (PF00595) | ER | |||
| 608538.HTH_1567 | (PF00595) | ER | |||
| 608538.HTH_1815 | (PF02911) | (mitochondrial) | |||
| 608538.HTH_0283 | (PF00115) | ER | |||
| 608538.HTH_1487 | (PF02630) | ER | |||
| 608538.HTH_1486 | (PF00115) | ER | |||
| 608538.HTH_1485 | (PF00116) | ER | |||
| 608538.HTH_0996 | (PF02635) | ER | |||
| 608538.HTH_0976 | (PF00430) | ER | |||
| 608538.Hydth_1231 | (PF00115) | ER | |||
| 608538.HTH_1550 | (PF00146) | ER | |||
| 608538.HTH_1556 | (PF00595) | ER | |||
| 608538.Hydth_1354 | (PF00595) | ER | |||
| 608538.Hydth_0930 | PF01597 | mitochondrial | |||
| 608538.Hydth_1686 | (PF00886) | mitochondrial | |||
| 608538.Hydth_0940 | (PF00115) | (mitochondrial) | |||
| 608538.HTH_1499 | (PF13429) | ER | |||
| 608538.HTH_0944 | (PF00115) | (mitochondrial) | |||
| 608538.Hydth_1224 | (PF13664) | ER | |||
| 608538.HTH_1834 | PF07998 | (mitochondrial) | |||
| 608538.HTH_1830 | PF00071 | (mitochondrial) | |||
| 608538.Hydth_0147 | (PF02239) | ER | |||
| 608538.Hydth_1817 | PF07998 | (mitochondrial) | |||
| 608538.Hydth_1813 | PF00071 | (mitochondrial) | |||
| 608538.HTH_0574 | PF00071 | mitochondrial | |||
| 608538.HTH_1715 | (PF09459) | ER | |||
| 608538.HTH_0175 | (PF00231) | (mitochondrial) | |||
| 608538.HTH_1155 | (PF01058) | (mitochondrial) | |||
| 608538.HTH_1150 | (PF00361) | ER | |||
| 608538.HTH_1153 | (PF00361) | ER | |||
| 608538.HTH_1152 | (PF00146) | ER | |||
| 608538.HTH_0718 | PF00861 | (mitochondrial) | |||
| 608538.HTH_1530 | (PF04187) | ER | |||
| 608538.HTH_1027 | (PF09990) | ER | |||
| 608538.Hydth_1023 | (PF09990) | ER | |||
| 608538.Hydth_0319 | (PF02620) | mitochondrial | |||
| 608538.Hydth_0042 | (PF00013) | ER | |||
| 608538.HTH_1701 | (PF00886) | mitochondrial | |||
| 608538.HTH_0146 | (PF02239) | ER | |||
| 608538.HTH_0149 | (PF02239) | ER | |||
| 608538.Hydth_0861 | PF00687 | (mitochondrial); mitochondrial | |||
| 608538.HTH_0729 | (PF00163) | (mitochondrial) | |||
| 608538.Hydth_1798 | (PF02911) | (mitochondrial) | |||
| 608538.Hydth_1538 | (PF00146) | ER | |||
| 608538.Hydth_1306 | (PF00958) | (mitochondrial) | |||
| 608538.HTH_1455 | (PF06418) | (ER) | |||
| 608538.HTH_1857 | (PF00595) | ER | |||
| 608538.HTH_0846 | (PF00237) | mitochondrial | |||
| 608538.Hydth_0697 | (PF00115) | ER | |||
| 608538.Hydth_1494 | (PF09990) | ER | |||
| 608538.HTH_0156 | (PF00033) | ER; (ER) | |||
| 608538.HTH_0152 | (PF00115) | ER | |||
| 608538.HTH_0150 | (PF02239) | ER | |||
| 608538.HTH_0151 | (PF02630) | ER | |||
| 608538.HTH_1601 | (PF00586) | (ER) | |||
| 608538.HTH_1194 | (PF02630) | ER | |||
| 608538.HTH_0934 | PF01597 | mitochondrial | |||
| 608538.HTH_1048 | (PF03099) | mitochondrial | |||
| 608538.Hydth_1473 | (PF00116) | ER | |||
| 608538.Hydth_1474 | (PF00115) | ER | |||
| 608538.HTH_1861 | (PF10143) | (ER) | |||
| 608538.Hydth_1866 | (PF02635) | ER | |||
| 608538.Hydth_0739 | (PF02597) | (mitochondrial) | |||
| 608538.Hydth_1643 | (PF11028) | ER | |||
| 608538.Hydth_1487 | (PF13429) | ER | |||
| 608538.HTH_1506 | (PF09990) | ER | |||
| 608538.Hydth_0993 | (PF02635) | ER | |||
| 608538.HTH_1870 | PF04930 | (ER) | |||
| 608538.HTH_1875 | (PF02635) | (mitochondrial) | |||
| 608538.Hydth_0430 | (PF13177) | mitochondrial; (mitochondrial) | |||
| 608538.Hydth_1852 | PF04930 | (ER) | |||
| 608538.Hydth_1857 | (PF02635) | (mitochondrial) | |||
| 608538.Hydth_0502 | (PF02416) | ER | |||
| 608538.Hydth_0501 | (PF02416) | ER | |||
| 608538.Hydth_0729 | (PF00163) | (mitochondrial) | |||
| 608538.HTH_0411 | (PF00361) | ER | |||
| 608538.Hydth_0025 | (PF03477) | (mitochondrial) | |||
| 608538.Hydth_1589 | (PF00586) | (ER) | |||
| 608538.Hydth_0851 | PF00297 | (mitochondrial) | |||
| 608538.HTH_0221 | (PF02881) (PF02978) | (mitochondrial) | |||
| 608538.HTH_0041 | (PF00013) | ER | |||
| 608538.HTH_1884 | (PF02635) | ER | |||
| 608538.HTH_1314 | (PF00958) | (mitochondrial) | |||
| 608538.Hydth_0220 | (PF02881) (PF02978) | (mitochondrial) | |||
| 608538.Hydth_1844 | (PF10143) | (ER) | |||
| 608538.Hydth_1840 | (PF00595) | ER | |||
| 608538.Hydth_0081 | (PF02635) | ER | |||
| 608538.Hydth_0718 | PF00861 | (mitochondrial) | |||
| 608538.Hydth_0151 | (PF02239) | ER | |||
| 608538.Hydth_0150 | (PF02239) | ER | |||
| 608538.Hydth_0153 | (PF00115) | ER | |||
| 608538.Hydth_0152 | (PF02630) | ER | |||
| 608538.Hydth_0157 | (PF00033) | ER; (ER) | |||
| 608538.HTH_0698 | (PF00115) | ER | |||
| 608538.Hydth_0846 | (PF00237) | mitochondrial | |||
| 608538.HTH_0851 | PF00297 | (mitochondrial) | |||
| 608538.HTH_0739 | (PF02597) | (mitochondrial) | |||
| 608538.HTH_1411 | (PF00507) | ER | |||
| 608538.Hydth_1475 | (PF02630) | ER | |||
| 608538.Hydth_0093 | (PF01058) | (mitochondrial) | |||
| 608538.Hydth_0414 | (PF00146) | ER | |||
| 608538.Hydth_0410 | (PF00361) | ER | |||
| 608538.Hydth_0411 | (PF00361) | (ER) | |||
| 608538.Hydth_0412 | (PF00507) | ER | |||
| 608538.Hydth_1144 | (PF00146) | ER | |||
| 608538.HTH_1791 | (PF00499) | ER | |||
| 608538.Hydth_1544 | (PF00595) | ER | |||
| 608538.Hydth_1042 | (PF03099) | mitochondrial | |||
| 608538.Hydth_1142 | (PF00361) | ER | |||
| 608538.Hydth_0176 | (PF00231) | (mitochondrial) | |||
| 608538.HTH_1657 | (PF11028) | ER | |||
| 608538.Hydth_0953 | (PF00231) | (mitochondrial) | |||
| 608538.HTH_0096 | (PF03099) | (plastid) | |||
| 608538.Hydth_1551 | (PF02597) | (ER) | |||
| 608538.Hydth_1146 | (PF00346) (PF00329) | ||||
| 608538.HTH_1154 | (PF00346) (PF00329) | ||||
| 608538.HTH_0862 | (PF00298) (PF03946) | ||||
| 608538.HTH_1134 | (PF02597) | (ER) | |||
| 608538.HTH_1685 | (PF00453) | (mitochondrial) | |||
| 608538.Hydth_1157 | (PF02769) (PF00586) | ||||
| 608538.Hydth_1081 | (PF08264) PF00133 | ||||
| 608538.Hydth_0370 | (PF03948) (PF01281) | ||||
| 608538.Hydth_0117 | (PF01195) | (mitochondrial) | |||
| 608538.HTH_0414 | (PF00346) (PF00329) | ||||
| 608538.Hydth_1719 | PF16114 (PF08442) | ||||
| 608538.HTH_1238 | (PF04055) (PF13394) | ||||
| 608538.HTH_0327 | (PF04055) (PF13394) | ||||
| 608538.HTH_0747 | (PF08264) PF00133 | ||||
| 608538.Hydth_1368 | (PF02769) (PF00586) | ||||
| 608538.Hydth_0298 | (PF04055) (PF00919) | ||||
| 608538.Hydth_1402 | (PF00346) (PF00329) | ||||
| 608538.Hydth_0291 | (PF08264) PF00133 | ||||
| 608538.Hydth_0747 | (PF08264) PF00133 | ||||
| 608538.HTH_0335 | PF00071 | (mitochondrial) | |||
| 608538.HTH_1113 | (PF00543) | (mitochondrial) | |||
| 608538.HTH_1114 | (PF00543) | (mitochondrial) | |||
| 608538.HTH_1378 | (PF02769) (PF00586) | ||||
| 608538.Hydth_1176 | (PF04055) (PF13394) | ||||
| 608538.HTH_0502 | (PF02416) | ER; not used | |||
| 608538.HTH_0293 | (PF08264) PF00133 | ||||
| 608538.HTH_0300 | (PF04055) (PF00919) | ||||
| 608538.Hydth_1838 | (PF01509) | (plastid) | |||
| 608538.HTH_1006 | (PF02769) (PF00586) | ||||
| 608538.Hydth_1230 | (PF04055) (PF13394) | ||||
| 608538.Hydth_0482 | (PF04055) (PF00919) | ||||
| 608538.Hydth_0938 | (PF04055) (PF13394) | ||||
| 608538.Hydth_1531 | (PF14714) | (mitochondrial) | |||
| 608538.HTH_1165 | (PF02769) (PF00586) | ||||
| 608538.HTH_0942 | (PF04055) (PF13394) | ||||
| 608538.Hydth_1032 | (PF01242) | (mitochondrial) | |||
| 608538.Hydth_1035 | (PF02635) | (mitochondrial) | |||
| 608538.Hydth_0325 | (PF04055) (PF13394) | ||||
| 608538.Hydth_0786 | (PF02769) (PF00586) | ||||
| 608538.Hydth_0730 | (PF01000) (PF01193) | ||||
| 608538.HTH_0372 | (PF03948) (PF01281) | ||||
| 608538.HTH_0177 | (PF01138) (PF03725) | ||||
| 608538.HTH_0714 | PF00673 PF00281 | ||||
| 608538.HTH_0719 | PF03719 PF00333 | ||||
| 608538.HTH_0957 | (PF00231) | (mitochondrial) | |||
| 608538.HTH_1686 | (PF01409) (PF02912) | ||||
| 608538.Hydth_0044 | (PF03484) (PF03147) | ||||
| 608538.Hydth_0862 | (PF00298) (PF03946) | ||||
| 608538.HTH_0720 | (PF00327) | (mitochondrial) | |||
| 608538.HTH_1038 | (PF01242) | (mitochondrial) | |||
| 608538.HTH_1855 | (PF01509) | (plastid) | |||
| 608538.Hydth_1875 | (PF08442) (PF00549) | ||||
| 608538.HTH_0841 | (PF08264) PF00133 | ||||
| 608538.HTH_0844 | PF00252 | (mitochondrial) | |||
| 608538.Hydth_0693 | (PF00318) | (plastid) | |||
| 608538.HTH_1737 | PF16114 (PF08442) | ||||
| 608538.HTH_1739 | (PF13597) (PF03477) | ||||
| 608538.HTH_0153 | (PF00115) | (mitochondrial) | |||
| 608538.HTH_0484 | (PF04055) (PF00919) | ||||
| 608538.HTH_0730 | (PF01000) (PF01193) | ||||
| 608538.HTH_0731 | (PF01196) | (mitochondrial) | |||
| 608538.HTH_1041 | (PF02635) | (mitochondrial) | |||
| 608538.HTH_1046 | PF00133 (PF13603) | ||||
| 608538.HTH_1543 | (PF14714) | (mitochondrial) | |||
| 608538.Hydth_1003 | (PF02769) (PF00586) | ||||
| 608538.Hydth_0731 | (PF01196) | (mitochondrial) | |||
| 608538.Hydth_0738 | (PF04055) (PF13394) | ||||
| 608538.Hydth_0841 | (PF08264) PF00133 | ||||
| 608538.Hydth_0845 | PF00189 (PF07650) | ||||
| 608538.Hydth_0844 | PF00252 | (mitochondrial) | |||
| 608538.HTH_1184 | (PF04055) (PF13394) | ||||
| 608538.Hydth_1261 | (PF04055) (PF13394) | ||||
| 608538.Hydth_1105 | (PF00543) | (mitochondrial) | |||
| 608538.Hydth_1106 | (PF00543) | (mitochondrial) | |||
| 608538.Hydth_0211 | (PF04055) (PF00919) | ||||
| 608538.Hydth_0500 | (PF02416) | ER; not used | |||
| 608538.Hydth_0720 | (PF00327) | (mitochondrial) | |||
| 608538.Hydth_1671 | (PF01409) (PF02912) | ||||
| 608538.Hydth_1670 | (PF00453) | (mitochondrial) | |||
| 608538.HTH_0043 | (PF03484) (PF03147) | ||||
| 608538.HTH_1269 | (PF04055) (PF13394) | ||||
| 608538.HTH_1088 | (PF08264) PF00133 | ||||
| 608538.Hydth_0714 | PF00673 PF00281 | ||||
| 608538.Hydth_0719 | PF03719 PF00333 | ||||
| 608538.Hydth_0154 | (PF00115) | (mitochondrial) | |||
| 608538.HTH_0694 | (PF00318) | (plastid) | |||
| 608538.HTH_0212 | (PF04055) (PF00919) | ||||
| 608538.HTH_0738 | (PF04055) (PF13394) | ||||
| 608538.HTH_1413 | (PF00346) (PF00329) | ||||
| 608538.HTH_1893 | (PF08442) (PF00549) | ||||
| 608538.Hydth_1126 | (PF02597) | (ER) | |||
| 608538.Hydth_0097 | (PF03099) | (plastid) | |||
| 608538.Hydth_0413 | (PF00346) (PF00329) | ||||
| 608538.HTH_0116 | (PF01195) | (mitochondrial) | |||
| 608538.Hydth_1721 | (PF13597) (PF03477) | ||||
| 608538.HTH_0845 | PF00189 (PF07650) | ||||
| 608538.Hydth_1040 | PF00133 (PF13603) | ||||
| 608538.Hydth_0178 | (PF01138) (PF03725) | ||||
| 608538.HTH_0786 | (PF02769) (PF00586) | ||||
| 608538.Hydth_0951 | (PF01795) | ||||
| 608538.Hydth_1421 | (PF00025) | ||||
| 608538.HTH_1432 | (PF00025) | ||||
| 608538.HTH_1430 | (PF02410) | ||||
| 608538.HTH_1627 | (PF00829) | ||||
| 608538.Hydth_1382 | (PF02436) | ||||
| 608538.Hydth_0659 | (PF04055) | ||||
| 608538.Hydth_1099 | (PF02677) | ||||
| 608538.HTH_0304 | (PF06071) | ||||
| 608538.Hydth_1781 | (PF02873) | ||||
| 608538.Hydth_1895 | (PF02033) | ||||
| 608538.Hydth_0404 | (PF04055) | ||||
| 608538.Hydth_0766 | (PF04055) | ||||
| 608538.Hydth_0765 | (PF04493) | ||||
| 608538.Hydth_0760 | (PF00707) | ||||
| 608538.HTH_0791 | (PF02224) | ||||
| 608538.Hydth_1419 | (PF02410) | ||||
| 608538.HTH_0087 | (PF00343) | ||||
| 608538.HTH_0088 | (PF00343) | ||||
| 608538.HTH_0860 | (PF00466) | ||||
| 608538.HTH_0866 | (PF03143) | ||||
| 608538.HTH_0864 | (PF00584) | ||||
| 608538.Hydth_1568 | (PF03079) | ||||
| 608538.HTH_1535 | PF01597 | ||||
| 608538.Hydth_1153 | (PF06508) | ||||
| 608538.HTH_1913 | (PF02033) | ||||
| 608538.Hydth_1399 | (PF02881) | ||||
| 608538.Hydth_1085 | (PF17147) | ||||
| 608538.Hydth_1087 | (PF17147) | ||||
| 608538.Hydth_0373 | (PF01250) | ||||
| 608538.Hydth_1883 | (PF01927) | ||||
| 608538.Hydth_0576 | PF00572 | ||||
| 608538.Hydth_0575 | PF00380 | ||||
| 608538.Hydth_0593 | (PF01018) | ||||
| 608538.Hydth_0592 | (PF03462) | ||||
| 608538.Hydth_0620 | (PF01171) | ||||
| 608538.Hydth_0023 | (PF13184) | ||||
| 608538.Hydth_1713 | (PF02875) | ||||
| 608538.Hydth_1717 | (PF04127) | ||||
| 608538.Hydth_1405 | (PF06508) | ||||
| 608538.Hydth_1401 | (PF01058) | ||||
| 608538.Hydth_0977 | (PF02911) | ||||
| 608538.Hydth_0971 | (PF00430) | ||||
| 608538.HTH_1127 | (PF13370) | ||||
| 608538.HTH_1120 | (PF00543) | ||||
| 608538.Hydth_1572 | (PF00543) | ||||
| 608538.HTH_0742 | (PF12344) | ||||
| 608538.Hydth_1169 | PF00312 | ||||
| 608538.Hydth_1164 | (PF04055) | ||||
| 608538.HTH_1906 | (PF00814) | ||||
| 608538.HTH_1901 | (PF01927) | ||||
| 608538.Hydth_1185 | (PF02527) | ||||
| 608538.Hydth_1184 | (PF08704) | ||||
| 608538.Hydth_0569 | (PF01743) | ||||
| 608538.Hydth_0567 | (PF02347) | ||||
| 608538.Hydth_0108 | (PF00162) | ||||
| 608538.HTH_0773 | PF02005 | ||||
| 608538.HTH_1272 | (PF04055) | ||||
| 608538.HTH_0852 | PF00338 | ||||
| 608538.HTH_0405 | (PF04055) | ||||
| 608538.Hydth_0744 | (PF10576) | ||||
| 608538.Hydth_0742 | (PF12344) | ||||
| 608538.Hydth_0035 | (PF10576) | ||||
| 608538.HTH_0242 | (PF03161) | ||||
| 608538.HTH_0247 | (PF14622) | ||||
| 608538.HTH_1594 | (PF02403) | ||||
| 608538.HTH_1592 | (PF13393) | ||||
| 608538.HTH_1205 | (PF08459) | ||||
| 608538.HTH_0621 | (PF01171) | ||||
| 608538.HTH_1112 | (PF02560) | ||||
| 608538.Hydth_1372 | (PF02597) | ||||
| 608538.Hydth_1190 | (PF02875) | ||||
| 608538.Hydth_1191 | (PF01959) | ||||
| 608538.Hydth_1197 | (PF08459) | ||||
| 608538.Hydth_0351 | (PF02938) | ||||
| 608538.Hydth_0132 | (PF00684) | ||||
| 608538.HTH_0434 | (PF13507) | ||||
| 608538.HTH_0500 | (PF02875) | ||||
| 608538.HTH_1580 | (PF03079) | ||||
| 608538.HTH_1584 | (PF00543) | ||||
| 608538.HTH_1212 | (PF03070) | ||||
| 608538.HTH_1213 | (PF04055) | ||||
| 608538.HTH_1214 | (PF03070) | ||||
| 608538.HTH_0342 | PF03465 | ||||
| 608538.HTH_0344 | (PF01687) | ||||
| 608538.HTH_0182 | (PF02367) | ||||
| 608538.Hydth_0820 | (PF01649) | ||||
| 608538.Hydth_0822 | PF03266 | ||||
| 608538.HTH_1109 | (PF02602) | ||||
| 608538.HTH_1107 | (PF02677) | ||||
| 608538.HTH_1103 | (PF00543) | ||||
| 608538.HTH_0987 | (PF01782) | ||||
| 608538.HTH_0986 | (PF01106) | ||||
| 608538.HTH_0981 | (PF02911) | ||||
| 608538.Hydth_1519 | (PF13662) | ||||
| 608538.Hydth_1515 | (PF13534) | ||||
| 608538.HTH_0765 | (PF04055) | ||||
| 608538.HTH_0764 | (PF04493) | ||||
| 608538.HTH_1360 | (PF13662) | ||||
| 608538.HTH_1364 | (PF00814) | ||||
| 608538.Hydth_1206 | (PF03070) | ||||
| 608538.Hydth_1204 | (PF03070) | ||||
| 608538.Hydth_1205 | (PF04055) | ||||
| 608538.HTH_1563 | (PF02597) | ||||
| 608538.Hydth_0340 | PF03465 | ||||
| 608538.Hydth_0342 | (PF01687) | ||||
| 608538.Hydth_1837 | (PF03462) | ||||
| 608538.HTH_1119 | (PF00543) | ||||
| 608538.HTH_0353 | (PF02938) | ||||
| 608538.HTH_0192 | (PF01487) | ||||
| 608538.Hydth_1523 | PF01597 | ||||
| 608538.Hydth_1524 | (PF02347) | ||||
| 608538.HTH_1172 | (PF04055) | ||||
| 608538.HTH_1177 | PF00312 | ||||
| 608538.HTH_0997 | (PF01192) | ||||
| 608538.HTH_0770 | (PF05697) | ||||
| 608538.HTH_0975 | (PF00430) | ||||
| 608538.HTH_1392 | (PF02436) | ||||
| 608538.HTH_1004 | (PF01058) | ||||
| 608538.Hydth_1233 | (PF04405) | ||||
| 608538.HTH_1553 | (PF17147) | ||||
| 608538.Hydth_1351 | (PF13662) | ||||
| 608538.Hydth_1355 | (PF00814) | ||||
| 608538.HTH_1821 | (PF13177) | ||||
| 608538.Hydth_1825 | (PF02602) | ||||
| 608538.Hydth_0244 | (PF14622) | ||||
| 608538.Hydth_0480 | (PF13393) | ||||
| 608538.Hydth_0791 | (PF02224) | ||||
| 608538.HTH_0568 | (PF02347) | ||||
| 608538.Hydth_1680 | (PF04055) | ||||
| 608538.HTH_1161 | (PF06508) | ||||
| 608538.HTH_0703 | (PF01242) | ||||
| 608538.HTH_0701 | (PF04055) | ||||
| 608538.HTH_1382 | (PF02597) | ||||
| 608538.HTH_1014 | (PF01058) | ||||
| 608538.Hydth_1220 | (PF01743) | ||||
| 608538.Hydth_1324 | (PF00033) | ||||
| 608538.HTH_1228 | (PF01743) | ||||
| 608538.Hydth_1034 | (PF02635) | ||||
| 608538.Hydth_0498 | (PF02875) | ||||
| 608538.Hydth_0496 | (PF01058) | ||||
| 608538.Hydth_0477 | (PF03652) | ||||
| 608538.Hydth_0075 | (PF02875) | ||||
| 608538.Hydth_0071 | (PF02130) | ||||
| 608538.HTH_0579 | (PF04055) | ||||
| 608538.HTH_0570 | (PF01743) | ||||
| 608538.HTH_0576 | PF00380 | ||||
| 608538.HTH_0577 | PF00572 | ||||
| 608538.HTH_0375 | (PF01250) | ||||
| 608538.HTH_0171 | (PF01715) | ||||
| 608538.HTH_1626 | (PF01016) | ||||
| 608538.HTH_0712 | PF00238 | ||||
| 608538.HTH_0713 | (PF17136) | ||||
| 608538.HTH_0716 | PF00410 | ||||
| 608538.HTH_0717 | PF00347 | ||||
| 608538.HTH_0955 | (PF01795) | ||||
| 608538.HTH_1531 | (PF13662) | ||||
| 608538.HTH_1536 | (PF02347) | ||||
| 608538.Hydth_1257 | (PF14791) | ||||
| 608538.Hydth_1253 | (PF04055) | ||||
| 608538.HTH_1449 | (PF01245) | ||||
| 608538.HTH_1448 | (PF01351) | ||||
| 608538.HTH_1842 | (PF02602) | ||||
| 608538.Hydth_1804 | (PF13177) | ||||
| 608538.Hydth_0441 | (PF02597) | ||||
| 608538.Hydth_0449 | (PF01106) | ||||
| 608538.HTH_0142 | (PF01951) | ||||
| 608538.HTH_0147 | (PF04055) | ||||
| 608538.HTH_0498 | (PF01058) | ||||
| 608538.Hydth_0864 | (PF00584) | ||||
| 608538.Hydth_0866 | (PF03143) | ||||
| 608538.Hydth_0860 | (PF00466) | ||||
| 608538.HTH_0728 | PF00411 | ||||
| 608538.HTH_0727 | PF00416 | ||||
| 608538.HTH_0721 | PF00828 | ||||
| 608538.HTH_0722 | (PF00344) | ||||
| 608538.Hydth_1859 | PF01597 | ||||
| 608538.HTH_1527 | (PF13534) | ||||
| 608538.HTH_0035 | (PF13370) | ||||
| 608538.HTH_0034 | (PF10576) | ||||
| 608538.Hydth_1301 | (PF06421) | ||||
| 608538.Hydth_1300 | (PF09414) | ||||
| 608538.HTH_1452 | (PF02436) | ||||
| 608538.HTH_1854 | (PF03462) | ||||
| 608538.Hydth_1011 | (PF01058) | ||||
| 608538.Hydth_1437 | (PF01245) | ||||
| 608538.Hydth_0302 | (PF06071) | ||||
| 608538.Hydth_1874 | (PF00549) | ||||
| 608538.Hydth_1877 | (PF00684) | ||||
| 608538.Hydth_1873 | (PF13370) | ||||
| 608538.Hydth_1872 | (PF13370) | ||||
| 608538.HTH_1241 | (PF04405) | ||||
| 608538.Hydth_0454 | (PF01058) | ||||
| 608538.HTH_1799 | (PF02873) | ||||
| 608538.Hydth_1436 | (PF01351) | ||||
| 608538.HTH_0661 | (PF04055) | ||||
| 608538.Hydth_0050 | (PF01351) | ||||
| 608538.HTH_0847 | (PF00203) | ||||
| 608538.Hydth_0692 | (PF00889) | ||||
| 608538.Hydth_0690 | (PF01765) | ||||
| 608538.HTH_1735 | (PF04127) | ||||
| 608538.HTH_1730 | (PF02875) | ||||
| 608538.HTH_1738 | (PF04055) | ||||
| 608538.HTH_0154 | (PF00116) | ||||
| 608538.HTH_0482 | (PF13393) | ||||
| 608538.HTH_1603 | (PF03099) | ||||
| 608538.HTH_1602 | (PF01668) | ||||
| 608538.HTH_1605 | (PF16561) | ||||
| 608538.HTH_1199 | (PF01959) | ||||
| 608538.HTH_1198 | (PF02875) | ||||
| 608538.Hydth_1277 | (PF04055) | ||||
| 608538.Hydth_1279 | PF01597 | ||||
| 608538.HTH_1192 | (PF08704) | ||||
| 608538.HTH_1040 | (PF02635) | ||||
| 608538.HTH_0022 | (PF13184) | ||||
| 608538.HTH_0021 | (PF02576) | ||||
| 608538.HTH_1285 | (PF04055) | ||||
| 608538.HTH_1287 | PF01597 | ||||
| 608538.Hydth_1001 | (PF01058) | ||||
| 608538.HTH_1860 | (PF04055) | ||||
| 608538.Hydth_1440 | (PF02436) | ||||
| 608538.HTH_0131 | (PF00684) | ||||
| 608538.Hydth_0192 | (PF01487) | ||||
| 608538.Hydth_1865 | (PF13534) | ||||
| 608538.Hydth_1861 | (PF13534) | ||||
| 608538.Hydth_0200 | (PF00549) | ||||
| 608538.Hydth_0578 | (PF04055) | ||||
| 608538.Hydth_1888 | (PF00814) | ||||
| 608538.Hydth_1580 | (PF13393) | ||||
| 608538.Hydth_0849 | PF00276 | ||||
| 608538.Hydth_0843 | (PF00831) | ||||
| 608538.Hydth_0842 | PF00366 | ||||
| 608538.Hydth_0847 | (PF00203) | ||||
| 608538.HTH_0235 | (PF01875) | ||||
| 608538.Hydth_1264 | (PF04055) | ||||
| 608538.Hydth_1262 | (PF11987) | ||||
| 608538.Hydth_1263 | (PF03099) | ||||
| 608538.Hydth_1467 | (PF00115) | ||||
| 608538.HTH_1292 | (PF02875) | ||||
| 608538.Hydth_0994 | (PF01192) | ||||
| 608538.HTH_0593 | (PF03462) | ||||
| 608538.HTH_1479 | (PF00115) | ||||
| 608538.HTH_1879 | (PF13534) | ||||
| 608538.HTH_1873 | (PF04055) | ||||
| 608538.HTH_1871 | (PF04055) | ||||
| 608538.HTH_1877 | PF01597 | ||||
| 608538.HTH_1874 | PF01597 | ||||
| 608538.Hydth_1101 | (PF02602) | ||||
| 608538.Hydth_1104 | (PF02560) | ||||
| 608538.Hydth_0183 | (PF02367) | ||||
| 608538.HTH_0842 | PF00366 | ||||
| 608538.Hydth_0433 | (PF13507) | ||||
| 608538.Hydth_1853 | (PF04055) | ||||
| 608538.Hydth_1856 | PF01597 | ||||
| 608538.Hydth_1855 | (PF04055) | ||||
| 608538.Hydth_0722 | (PF00344) | ||||
| 608538.Hydth_0721 | PF00828 | ||||
| 608538.Hydth_0727 | PF00416 | ||||
| 608538.Hydth_0728 | PF00411 | ||||
| 608538.Hydth_0022 | (PF02576) | ||||
| 608538.HTH_0820 | (PF01649) | ||||
| 608538.Hydth_0859 | (PF16320) | ||||
| 608538.Hydth_0850 | (PF00573) | ||||
| 608538.Hydth_1582 | (PF02403) | ||||
| 608538.Hydth_0855 | PF00177 | ||||
| 608538.Hydth_0856 | (PF00164) | ||||
| 608538.Hydth_0852 | PF00338 | ||||
| 608538.Hydth_0853 | (PF03143) | ||||
| 608538.HTH_0594 | (PF01018) | ||||
| 608538.Hydth_1297 | (PF01106) | ||||
| 608538.HTH_1265 | (PF14791) | ||||
| 608538.HTH_1261 | (PF04055) | ||||
| 608538.HTH_0049 | (PF01351) | ||||
| 608538.Hydth_0982 | (PF01106) | ||||
| 608538.Hydth_0983 | (PF01782) | ||||
| 608538.HTH_1883 | (PF13534) | ||||
| 608538.Hydth_1119 | (PF13370) | ||||
| 608538.Hydth_1112 | (PF00543) | ||||
| 608538.Hydth_1111 | (PF00543) | ||||
| 608538.Hydth_1843 | (PF04055) | ||||
| 608538.Hydth_0089 | (PF00343) | ||||
| 608538.Hydth_0088 | (PF00343) | ||||
| 608538.Hydth_0717 | PF00347 | ||||
| 608538.Hydth_0716 | PF00410 | ||||
| 608538.Hydth_0713 | (PF17136) | ||||
| 608538.Hydth_0712 | PF00238 | ||||
| 608538.Hydth_0155 | (PF00116) | ||||
| 608538.HTH_0856 | (PF00164) | ||||
| 608538.HTH_0691 | (PF01765) | ||||
| 608538.HTH_0693 | (PF00889) | ||||
| 608538.HTH_0456 | (PF01058) | ||||
| 608538.HTH_0107 | (PF00162) | ||||
| 608538.HTH_0451 | (PF01106) | ||||
| 608538.Hydth_1593 | (PF16561) | ||||
| 608538.Hydth_1590 | (PF01668) | ||||
| 608538.Hydth_1591 | (PF03099) | ||||
| 608538.Hydth_1284 | (PF02875) | ||||
| 608538.HTH_0074 | (PF02875) | ||||
| 608538.HTH_0070 | (PF02130) | ||||
| 608538.HTH_0859 | (PF16320) | ||||
| 608538.HTH_1270 | (PF11987) | ||||
| 608538.HTH_1271 | (PF03099) | ||||
| 608538.HTH_0853 | (PF03143) | ||||
| 608538.HTH_0850 | (PF00573) | ||||
| 608538.HTH_0855 | PF00177 | ||||
| 608538.HTH_1095 | (PF17147) | ||||
| 608538.HTH_1093 | (PF17147) | ||||
| 608538.HTH_1410 | (PF02881) | ||||
| 608538.HTH_1412 | (PF01058) | ||||
| 608538.HTH_1416 | (PF06508) | ||||
| 608538.HTH_1895 | (PF00684) | ||||
| 608538.HTH_1890 | (PF13370) | ||||
| 608538.HTH_1891 | (PF13370) | ||||
| 608538.HTH_1892 | (PF00549) | ||||
| 608538.HTH_1308 | (PF09414) | ||||
| 608538.HTH_1309 | (PF06421) | ||||
| 608538.HTH_1305 | (PF01106) | ||||
| 608538.Hydth_0234 | (PF01875) | ||||
| 608538.HTH_1193 | (PF02527) | ||||
| 608538.Hydth_0036 | (PF13370) | ||||
| 608538.Hydth_0701 | (PF04055) | ||||
| 608538.Hydth_0703 | (PF01242) | ||||
| 608538.Hydth_0143 | (PF01951) | ||||
| 608538.Hydth_0148 | (PF04055) | ||||
| 608538.Hydth_1615 | (PF00829) | ||||
| 608538.Hydth_1614 | (PF01016) | ||||
| 608538.HTH_0822 | PF03266 | ||||
| 608538.HTH_0443 | (PF02597) | ||||
| 608538.Hydth_1720 | (PF04055) | ||||
| 608538.HTH_0024 | (PF03477) | ||||
| 608538.HTH_0201 | (PF00549) | ||||
| 608538.HTH_1695 | (PF04055) | ||||
| 608538.HTH_0744 | (PF10576) | ||||
| 608538.HTH_0849 | PF00276 | ||||
| 608538.HTH_0843 | (PF00831) | ||||
| 608538.Hydth_1541 | (PF17147) | ||||
| 608538.HTH_0759 | (PF00707) | ||||
| 608538.HTH_1333 | (PF00033) | ||||
| 608538.Hydth_0774 | PF02005 | ||||
| 608538.Hydth_0771 | (PF05697) | ||||
| 608538.Hydth_0172 | (PF01715) | ||||
| 608538.HTH_0479 | (PF03652) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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Contact
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- +43 1 4277 876681
- contact.cube@univie.ac.at
