Effective results for Prevotella amnii CRIS 21A-A (eggnog40)

Summary

Number of putative secreted proteins: 40
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 40 proteins (10 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
679191.HMPREF9018_0392				(PF03051)	ER
679191.HMPREF9018_0245				(PF03412)	(mitochondrial)
679191.HMPREF9018_1678				(PF05693)	(ER)
679191.HMPREF9018_1069				(PF03051)	ER
679191.HMPREF9018_1246				(PF01715)	mitochondrial; (mitochondrial)
679191.HMPREF9018_1191				(PF03051)	ER
679191.HMPREF9018_0552				(PF03412)	(mitochondrial)
679191.HMPREF9018_1570				(PF03092)	(ER)
679191.HMPREF9018_1639				(PF01807) PF13155
679191.HMPREF9018_0803				(PF01715)	(mitochondrial)
679191.HMPREF9018_0922				(PF01807) PF13155
679191.HMPREF9018_1534				(PF01807) PF13155
679191.HMPREF9018_0372				(PF07837) (PF02971)
679191.HMPREF9018_0656				(PF03432)
679191.HMPREF9018_0529				(PF03412)
679191.HMPREF9018_0097				(PF03432)
679191.HMPREF9018_0708				(PF03051)
679191.HMPREF9018_1546				(PF03412)
679191.HMPREF9018_2025				(PF03432)
679191.HMPREF9018_0472				(PF03432)
679191.HMPREF9018_0475				(PF03412)
679191.HMPREF9018_0916				PF16269
679191.HMPREF9018_1786				(PF03432)
679191.HMPREF9018_1395				(PF03412)
679191.HMPREF9018_1860				PF13155	not used
679191.HMPREF9018_1460				PF13155	not used
679191.HMPREF9018_1462				PF13155	not used
679191.HMPREF9018_1465				(PF03432)
679191.HMPREF9018_0805				(PF02689)
679191.HMPREF9018_1215				(PF16314)
679191.HMPREF9018_1857				(PF03432)
679191.HMPREF9018_1329				(PF03630)
679191.HMPREF9018_1453				(PF01807)
679191.HMPREF9018_1531				(PF03432)
679191.HMPREF9018_0551				(PF03432)
679191.HMPREF9018_0548				PF13155
679191.HMPREF9018_1313				PF13155
679191.HMPREF9018_1484				PF13155
679191.HMPREF9018_1791				(PF03412)
679191.HMPREF9018_0731				(PF16011)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================