Effective results for Bacteroides coprosuis DSM 18011 (eggnog40)

Summary

Number of putative secreted proteins: 57
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 57 proteins (1 high, 56 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
679937.Bcop_2048				(PF12972) (PF12971) (PF05089)	ER
679937.Bcop_2052				(PF12972) (PF12971) (PF05089)	ER
679937.Bcop_1549				(PF16332) (PF07940)	ER
679937.Bcop_1984				(PF16889) (PF07940)	ER
679937.Bcop_1983				(PF16332) (PF07940)	ER
679937.Bcop_1991				(PF16889) (PF07940)	ER
679937.Bcop_1992				(PF16889) (PF07940)	ER
679937.Bcop_0431				(PF13431)	ER
679937.Bcop_0537				(PF03092)	ER
679937.Bcop_0464				(PF13905)	ER
679937.Bcop_0489				(PF13905)	ER
679937.Bcop_1999				(PF01610)	ER; (ER)
679937.Bcop_0252				(PF13431)	ER
679937.Bcop_1269				(PF03663)	ER
679937.Bcop_1268				(PF03663)	ER
679937.Bcop_1832				(PF00728)	ER; (ER)
679937.Bcop_1831				(PF00728)	ER
679937.Bcop_0290				(PF00728)	ER
679937.Bcop_0297				(PF00728)	ER
679937.Bcop_0607				(PF01610)	ER; (ER)
679937.Bcop_2329				(PF00728)	ER
679937.Bcop_1026				(PF13905)	ER
679937.Bcop_1371				(PF00728)	ER
679937.Bcop_1376				(PF01610)	ER; (ER)
679937.Bcop_0895				(PF13905)	ER
679937.Bcop_1795				(PF07168)	ER
679937.Bcop_2096				(PF01610)	(mitochondrial)
679937.Bcop_0524				(PF01610)	(mitochondrial)
679937.Bcop_1130				(PF05034) (PF07476)
679937.Bcop_1224				(PF02971) (PF07837)
679937.Bcop_1742				(PF03630)	(plastid)
679937.Bcop_0934				(PF01610)
679937.Bcop_1086				(PF00302)
679937.Bcop_0451				(PF01610)
679937.Bcop_1870				(PF04432)
679937.Bcop_1871				(PF04432)
679937.Bcop_1749				(PF12640)
679937.Bcop_1058				(PF16314)
679937.Bcop_0274				(PF01610)
679937.Bcop_0273				(PF01649)
679937.Bcop_0272				(PF01649)
679937.Bcop_2061				(PF01610)
679937.Bcop_1609				(PF01610)
679937.Bcop_1047				(PF01715)
679937.Bcop_0539				PF16269
679937.Bcop_0750				(PF01715)
679937.Bcop_0830				(PF01610)
679937.Bcop_0525				(PF01610)
679937.Bcop_1641				(PF00302)
679937.Bcop_0606				(PF01610)
679937.Bcop_1132				(PF14330)
679937.Bcop_2003				(PF01610)
679937.Bcop_2004				(PF01610)
679937.Bcop_1592				(PF00302)
679937.Bcop_0882				(PF05693)
679937.Bcop_0376				(PF16011)
679937.Bcop_1767				(PF16565)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================