Effective results for Prevotella denticola F0289 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 30 proteins (1 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
767031.HMPREF9137_0525				(PF03051)	ER
767031.HMPREF9137_2089				(PF03092)	ER
767031.HMPREF9137_1730				(PF03051)	ER
767031.HMPREF9137_1731				(PF00328)	(ER)
767031.HMPREF9137_2428				(PF05704)	(mitochondrial)
767031.HMPREF9137_2424				(PF05704)	(mitochondrial)
767031.HMPREF9137_1439				(PF03051)	ER
767031.HMPREF9137_2013				(PF03644)	ER
767031.HMPREF9137_0592				(PF16116)	ER; (ER)
767031.HMPREF9137_0138				(PF12256)	ER
767031.HMPREF9137_2217				(PF16314)	(mitochondrial)
767031.HMPREF9137_0995				(PF16116)	ER
767031.HMPREF9137_0008				(PF05970) (PF02689)
767031.HMPREF9137_2421				(PF04991)	(mitochondrial)
767031.HMPREF9137_1323				(PF07837) (PF02971)
767031.HMPREF9137_0021				(PF13151)
767031.HMPREF9137_0029				(PF04991)
767031.HMPREF9137_1476				(PF01715)
767031.HMPREF9137_0798				(PF05970)
767031.HMPREF9137_0006				(PF01715)
767031.HMPREF9137_0805				(PF04991)
767031.HMPREF9137_2289				(PF16011)
767031.HMPREF9137_0464				(PF05693)
767031.HMPREF9137_0459				(PF13151)
767031.HMPREF9137_0455				(PF02033)
767031.HMPREF9137_0149				(PF12256)
767031.HMPREF9137_0444				(PF02033)
767031.HMPREF9137_2455				(PF00328)
767031.HMPREF9137_0196				(PF03630)
767031.HMPREF9137_1138				PF16269

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================