Effective results for Prevotella pallens ATCC 700821 (eggnog40)

Summary

Number of putative secreted proteins: 70
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 70 proteins (2 high, 68 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
997353.HMPREF9144_2515				(PF15588)	(mitochondrial)
997353.HMPREF9144_2161				(PF13306)	ER
997353.HMPREF9144_1408				(PF00959)	ER
997353.HMPREF9144_0848				(PF13306)	ER
997353.HMPREF9144_0543				(PF13306)	ER
997353.HMPREF9144_1570				(PF13306)	ER
997353.HMPREF9144_1824				(PF03432)	(mitochondrial)
997353.HMPREF9144_0417				(PF03051)	ER
997353.HMPREF9144_2210				(PF00959)	ER
997353.HMPREF9144_1866				(PF13306)	ER
997353.HMPREF9144_2442				(PF12256)	ER
997353.HMPREF9144_0011				(PF03051)	ER
997353.HMPREF9144_0319				(PF13306)	ER
997353.HMPREF9144_1469				(PF03051)	ER
997353.HMPREF9144_0828				PF12812	(ER); ER
997353.HMPREF9144_0497				(PF13306)	ER
997353.HMPREF9144_2332				(PF13306)	ER
997353.HMPREF9144_0582				(PF03412)	mitochondrial
997353.HMPREF9144_2538				(PF05686)	(mitochondrial)
997353.HMPREF9144_0122				(PF13306)	ER
997353.HMPREF9144_0125				(PF13306)	ER
997353.HMPREF9144_1455				(PF12256)	ER
997353.HMPREF9144_2430				(PF13306)	ER
997353.HMPREF9144_1888				(PF13306)	ER
997353.HMPREF9144_0734				(PF13306)	ER
997353.HMPREF9144_2033				(PF13155) (PF01807)
997353.HMPREF9144_1826				(PF13155) (PF01807)
997353.HMPREF9144_0963				(PF07837) (PF02971)
997353.HMPREF9144_0205				(PF13306)	(ER)
997353.HMPREF9144_2698				(PF05034) (PF07476)
997353.HMPREF9144_0822				(PF01715)	(mitochondrial)
997353.HMPREF9144_0049				(PF13155) (PF01807)
997353.HMPREF9144_1882				(PF13155) (PF01807)
997353.HMPREF9144_2770				(PF13306)
997353.HMPREF9144_0926				(PF16314)
997353.HMPREF9144_2700				(PF14330)
997353.HMPREF9144_0540				(PF05693)
997353.HMPREF9144_2009				(PF03432)
997353.HMPREF9144_1149				(PF01610)
997353.HMPREF9144_2494				(PF00959)
997353.HMPREF9144_2736				(PF03412)
997353.HMPREF9144_2739				(PF03412)
997353.HMPREF9144_2029				(PF03432)
997353.HMPREF9144_1166				(PF01610)	not used
997353.HMPREF9144_1581				PF16269
997353.HMPREF9144_0357				(PF03432)
997353.HMPREF9144_1809				(PF01610)
997353.HMPREF9144_2822				(PF01610)
997353.HMPREF9144_2857				(PF01610)	not used
997353.HMPREF9144_0511				(PF05970)
997353.HMPREF9144_1101				(PF01715)
997353.HMPREF9144_2455				(PF00959)	not used
997353.HMPREF9144_1250				(PF01610)
997353.HMPREF9144_2840				(PF02689)	not used
997353.HMPREF9144_2847				(PF05970)	not used
997353.HMPREF9144_1133				(PF03630)
997353.HMPREF9144_0537				(PF00959)
997353.HMPREF9144_1302				(PF01610)	not used
997353.HMPREF9144_1307				(PF01610)
997353.HMPREF9144_2472				(PF03432)
997353.HMPREF9144_2787				(PF13155)
997353.HMPREF9144_1249				(PF01610)	not used
997353.HMPREF9144_1854				(PF13306)
997353.HMPREF9144_2744				(PF03412)
997353.HMPREF9144_2741				(PF03412)
997353.HMPREF9144_0052				(PF03432)
997353.HMPREF9144_0468				(PF03412)
997353.HMPREF9144_1423				(PF03432)
997353.HMPREF9144_1426				(PF03412)
997353.HMPREF9144_2358				(PF01610)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================