Effective results for Actinobacillus pleuropneumoniae serovar 1 str. 4074 (eggnog40)
Summary
Number of putative secreted proteins: 603
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 215 eukaryotic-like domains, contained in 603 proteins (76 high, 527 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 228399.Aple02001040 | (PF04561) (PF10385) (PF04565) (PF00562) (PF04563) (PF04560) | ||||
| 228399.appser1_18510 | (PF04561) (PF10385) (PF04565) (PF00562) (PF04563) (PF04560) | ||||
| 228399.Aple02000402 | (PF02875) (PF08245) (PF01225) | (ER) | |||
| 228399.Aple02000458 | (PF01336) (PF00152) (PF02938) | mitochondrial | |||
| 228399.Aple02001039 | (PF04998) (PF04983) (PF04997) (PF05000) (PF00623) | ||||
| 228399.appser1_280 | (PF02875) (PF08245) (PF01225) | (ER) | |||
| 228399.appser1_12670 | (PF01336) (PF00152) (PF02938) | mitochondrial | |||
| 228399.appser1_18530 | (PF04998) (PF04983) (PF04997) (PF00623) (PF05000) | ||||
| 228399.appser1_14920 | (PF16327) (PF01578) | ER | |||
| 228399.appser1_19080 | (PF01479) (PF00163) | (mitochondrial); mitochondrial | |||
| 228399.Aple02000957 | (PF01138) (PF03726) (PF03725) (PF00575) | ||||
| 228399.Aple02000802 | (PF16327) (PF01578) | ER | |||
| 228399.appser1_11640 | (PF16327) (PF01578) | ER | |||
| 228399.Aple02001430 | (PF16327) (PF01578) | ER | |||
| 228399.Aple02001243 | (PF01479) (PF00163) | (mitochondrial); mitochondrial | |||
| 228399.Aple02001410 | (PF03144) (PF00009) | mitochondrial; (mitochondrial) | |||
| 228399.appser1_6430 | (PF01138) (PF03726) (PF03725) (PF00575) | ||||
| 228399.appser1_15340 | (PF03222) | ER | |||
| 228399.appser1_13330 | (PF03595) | ER | |||
| 228399.appser1_13750 | (PF00939) | (ER) | |||
| 228399.Aple02001727 | (PF06250) | (mitochondrial) | |||
| 228399.appser1_8210 | (PF03788) | ER | |||
| 228399.appser1_14150 | (PF00595) | ER | |||
| 228399.appser1_10900 | PF01755 | ER; mitochondrial | |||
| 228399.appser1_1550 | (PF00710) | ER | |||
| 228399.Aple02000131 | (PF00133) (PF08264) (PF13603) | ||||
| 228399.Aple02000719 | (PF04172) | ER | |||
| 228399.Aple02000396 | (PF02875) (PF08245) (PF01225) | ||||
| 228399.Aple02000401 | (PF02875) (PF08245) (PF01225) | ||||
| 228399.Aple02000407 | (PF08496) | ER | |||
| 228399.appser1_4810 | (PF00950) | ER | |||
| 228399.Aple02000482 | (PF02844) PF01071 (PF02843) | ||||
| 228399.Aple02001785 | (PF02881) (PF02978) | (mitochondrial) | |||
| 228399.Aple02001291 | (PF03595) | ER | |||
| 228399.Aple02001900 | (PF01578) | ER | |||
| 228399.appser1_3390 | (PF00849) | ER | |||
| 228399.Aple02002104 | (PF00764) | ER | |||
| 228399.appser1_1480 | (PF00950) | ER | |||
| 228399.appser1_4620 | (PF00764) | ER | |||
| 228399.Aple02000645 | (PF01715) | ER | |||
| 228399.Aple02000464 | (PF01717) | (mitochondrial) | |||
| 228399.Aple02000465 | (PF00939) | ER | |||
| 228399.appser1_230 | (PF08496) | ER | |||
| 228399.Aple02001728 | (PF06250) | (mitochondrial) | |||
| 228399.appser1_9390 | (PF00133) (PF08264) (PF13603) | ||||
| 228399.appser1_4520 | (PF00595) | ER | |||
| 228399.Aple02002114 | PF01071 | (mitochondrial) | |||
| 228399.Aple02000985 | (PF01632) | mitochondrial | |||
| 228399.Aple02000984 | (PF00453) | mitochondrial | |||
| 228399.Aple02000077 | (PF03253) | ER | |||
| 228399.Aple02000693 | (PF04172) | ER | |||
| 228399.Aple02000692 | (PF03788) | ER | |||
| 228399.Aple02000522 | (PF03595) | ER | |||
| 228399.appser1_18730 | (PF16582) | (mitochondrial) | |||
| 228399.appser1_6050 | (PF14622) | ER | |||
| 228399.Aple02001553 | (PF00595) | ER | |||
| 228399.appser1_14410 | (PF00696) | (mitochondrial) | |||
| 228399.appser1_6020 | (PF06421) (PF03144) (PF00009) | ||||
| 228399.Aple02000833 | (PF16187) | ER | |||
| 228399.Aple02001953 | (PF07650) | (mitochondrial) | |||
| 228399.appser1_18620 | (PF03749) | (mitochondrial) | |||
| 228399.Aple02001547 | (PF02875) (PF08245) (PF01225) | ||||
| 228399.Aple02001124 | (PF00950) | ER | |||
| 228399.appser1_9230 | (PF03222) | ER | |||
| 228399.appser1_10890 | (PF01075) | (mitochondrial) | |||
| 228399.Aple02002140 | (PF00237) | (mitochondrial) | |||
| 228399.Aple02000936 | (PF03222) | (ER) | |||
| 228399.Aple02000865 | (PF02873) | (mitochondrial) | |||
| 228399.appser1_340 | (PF02875) (PF08245) (PF01225) | ||||
| 228399.appser1_13720 | (PF00939) | (ER) | |||
| 228399.appser1_2460 | (PF01632) | mitochondrial | |||
| 228399.Aple02001155 | (PF00950) | ER | |||
| 228399.appser1_18890 | (PF00237) | (mitochondrial) | |||
| 228399.Aple02001206 | (PF06421) (PF03144) (PF00009) | ||||
| 228399.Aple02002153 | (PF03749) | (mitochondrial) | |||
| 228399.appser1_11620 | (PF03918) | ER | |||
| 228399.appser1_15290 | (PF02875) (PF08245) (PF01225) | ||||
| 228399.appser1_19770 | (PF02873) | (mitochondrial) | |||
| 228399.appser1_2470 | (PF00453) | mitochondrial | |||
| 228399.Aple02001148 | (PF00595) | ER; (ER) | |||
| 228399.appser1_18410 | PF00687 | (mitochondrial) | |||
| 228399.appser1_4420 | (PF14714) | (mitochondrial); (plastid) | |||
| 228399.Aple02001777 | (PF16582) | (mitochondrial) | |||
| 228399.appser1_6630 | (PF03222) | (ER) | |||
| 228399.appser1_1400 | (PF00595) | ER; (ER) | |||
| 228399.Aple02000805 | (PF01578) | (mitochondrial) | |||
| 228399.Aple02001510 | (PF00939) | (ER) | |||
| 228399.Aple02001353 | PF00687 | (mitochondrial) | |||
| 228399.appser1_8420 | (PF04172) | ER | |||
| 228399.appser1_2870 | (PF13177) | (mitochondrial) | |||
| 228399.appser1_8430 | (PF03788) | ER | |||
| 228399.appser1_12730 | (PF01717) | (mitochondrial) | |||
| 228399.appser1_15320 | PF01071 | (mitochondrial) | |||
| 228399.Aple02000748 | (PF00696) | (mitochondrial) | |||
| 228399.Aple02000589 | (PF01075) | (mitochondrial) | |||
| 228399.Aple02001508 | (PF00939) | ER | |||
| 228399.Aple02001432 | (PF03918) | ER | |||
| 228399.appser1_1470 | (PF00950) | ER | |||
| 228399.appser1_20080 | (PF16187) | ER | |||
| 228399.appser1_9190 | (PF01717) | mitochondrial | |||
| 228399.appser1_19110 | (PF00886) | mitochondrial | |||
| 228399.Aple02002290 | (PF03253) | mitochondrial | |||
| 228399.appser1_15130 | (PF01578) | ER | |||
| 228399.Aple02001240 | (PF00886) | mitochondrial | |||
| 228399.appser1_8220 | (PF04172) | ER | |||
| 228399.appser1_3580 | (PF00091) | mitochondrial | |||
| 228399.appser1_12910 | (PF02844) PF01071 (PF02843) | ||||
| 228399.appser1_14300 | (PF06250) | (mitochondrial) | |||
| 228399.Aple02000720 | (PF03788) | ER | |||
| 228399.Aple02001251 | PF00861 | (mitochondrial) | |||
| 228399.appser1_19000 | PF00861 | (mitochondrial) | |||
| 228399.appser1_14310 | (PF06250) | (mitochondrial) | |||
| 228399.appser1_290 | (PF02875) (PF08245) (PF01225) | ||||
| 228399.Aple02000110 | (PF01717) | mitochondrial | |||
| 228399.Aple02000113 | (PF03222) | ER | |||
| 228399.Aple02001887 | (PF13177) | (mitochondrial) | |||
| 228399.Aple02001397 | PF13518 | (mitochondrial) | |||
| 228399.appser1_14950 | (PF01578) | (mitochondrial) | |||
| 228399.Aple02001262 | (PF14714) | (mitochondrial); (plastid) | |||
| 228399.appser1_19010 | PF03719 PF00333 | ||||
| 228399.appser1_6750 | (PF03484) (PF03147) | ||||
| 228399.appser1_12400 | (PF01479) (PF00849) | ||||
| 228399.appser1_6240 | (PF05872) | (mitochondrial) | |||
| 228399.Aple02001658 | (PF00696) | (mitochondrial) | |||
| 228399.Aple02000385 | (PF03144) (PF00009) | ||||
| 228399.Aple02001074 | (PF01743) (PF12627) | ||||
| 228399.appser1_10650 | PF02130 PF13718 | ||||
| 228399.appser1_3600 | (PF02769) (PF00586) | ||||
| 228399.Aple02002122 | PF02130 PF13718 | ||||
| 228399.appser1_7720 | (PF00696) | (plastid) | |||
| 228399.appser1_6740 | (PF01409) (PF02912) | ||||
| 228399.appser1_18960 | PF00673 PF00281 | ||||
| 228399.Aple02000392 | (PF00091) (PF12327) | ||||
| 228399.Aple02000399 | (PF02875) (PF08245) | ||||
| 228399.appser1_9510 | (PF00696) | (mitochondrial) | |||
| 228399.appser1_20030 | (PF01479) (PF00849) | ||||
| 228399.Aple02001446 | (PF03918) | (ER) | |||
| 228399.appser1_18670 | (PF02881) (PF02978) | ||||
| 228399.appser1_3090 | (PF00521) (PF03989) | ||||
| 228399.appser1_380 | (PF00091) (PF12327) | ||||
| 228399.Aple02002138 | (PF03947) (PF00181) | ||||
| 228399.Aple02002135 | PF00297 | (mitochondrial) | |||
| 228399.appser1_3890 | (PF01479) (PF00849) | ||||
| 228399.Aple02000896 | (PF13507) (PF02769) | ||||
| 228399.Aple02000276 | (PF00521) (PF03989) | ||||
| 228399.Aple02000278 | (PF05496) (PF05491) | ||||
| 228399.Aple02001705 | (PF01479) (PF00849) | ||||
| 228399.Aple02001352 | (PF00298) (PF03946) | ||||
| 228399.appser1_310 | (PF02875) (PF08245) | ||||
| 228399.appser1_19040 | (PF00344) | (ER) | |||
| 228399.Aple02002101 | (PF01075) | (mitochondrial) | |||
| 228399.appser1_13760 | (PF00204) (PF00986) | ||||
| 228399.appser1_18870 | (PF03947) (PF00181) | ||||
| 228399.Aple02001847 | (PF00696) | (plastid) | |||
| 228399.Aple02000469 | (PF01479) (PF00849) | ||||
| 228399.appser1_18900 | PF00189 (PF07650) | ||||
| 228399.Aple02001113 | PF10063 | (ER) | |||
| 228399.Aple02001114 | (PF06418) | (plastid) | |||
| 228399.Aple02002023 | (PF03144) (PF00009) | ||||
| 228399.Aple02002020 | (PF01138) (PF03725) | ||||
| 228399.Aple02002119 | (PF01075) | (ER) | |||
| 228399.appser1_6440 | (PF00521) (PF03989) | ||||
| 228399.Aple02000691 | (PF00773) (PF00575) | ||||
| 228399.appser1_18910 | PF00252 | (mitochondrial) | |||
| 228399.appser1_8030 | (PF00575) | (mitochondrial) | |||
| 228399.appser1_680 | (PF03144) (PF00009) | ||||
| 228399.appser1_2270 | (PF02769) (PF00586) | ||||
| 228399.appser1_7470 | (PF09330) | (plastid) | |||
| 228399.appser1_2720 | (PF00696) | (mitochondrial) | |||
| 228399.appser1_2000 | (PF01743) (PF12627) | ||||
| 228399.Aple02000200 | (PF01479) (PF00849) | ||||
| 228399.Aple02000203 | (PF08264) | (mitochondrial) | |||
| 228399.Aple02000331 | (PF01336) (PF00152) | ||||
| 228399.Aple02001621 | (PF02824) (PF13291) | ||||
| 228399.appser1_8730 | (PF10150) (PF00575) | ||||
| 228399.Aple02001009 | (PF01029) | (ER) | |||
| 228399.Aple02001008 | (PF02769) (PF00586) | ||||
| 228399.appser1_8860 | (PF00204) (PF00986) | ||||
| 228399.appser1_19090 | (PF01000) (PF01193) | ||||
| 228399.appser1_21710 | (PF03144) (PF00009) | ||||
| 228399.appser1_18840 | PF00297 | (mitochondrial) | |||
| 228399.Aple02000838 | (PF01479) (PF00849) | ||||
| 228399.appser1_590 | (PF00133) (PF08264) | ||||
| 228399.appser1_8720 | (PF01336) (PF00152) | ||||
| 228399.Aple02002148 | PF00673 PF00281 | ||||
| 228399.Aple02002141 | PF00189 (PF07650) | ||||
| 228399.Aple02002142 | PF00252 | (mitochondrial) | |||
| 228399.appser1_7320 | (PF01336) (PF00152) | ||||
| 228399.appser1_12120 | (PF02769) (PF00586) | ||||
| 228399.Aple02000956 | (PF00521) (PF03989) | ||||
| 228399.Aple02000228 | (PF02769) (PF00586) | ||||
| 228399.Aple02001977 | (PF10150) (PF00575) | ||||
| 228399.Aple02000143 | (PF00696) | (mitochondrial) | |||
| 228399.Aple02001787 | (PF02769) (PF00586) | ||||
| 228399.Aple02000761 | (PF02769) (PF00586) | ||||
| 228399.Aple02000478 | (PF03948) (PF01281) | ||||
| 228399.Aple02001365 | (PF10150) (PF00575) | ||||
| 228399.appser1_15600 | (PF10150) (PF00575) | ||||
| 228399.appser1_2260 | (PF01029) | (ER) | |||
| 228399.Aple02000371 | (PF00133) (PF08264) | ||||
| 228399.Aple02000973 | (PF05872) | (mitochondrial) | |||
| 228399.Aple02001511 | (PF00204) (PF00986) | ||||
| 228399.appser1_18400 | (PF00298) (PF03946) | ||||
| 228399.appser1_700 | (PF01138) (PF03725) | ||||
| 228399.Aple02000017 | (PF01649) | (mitochondrial) | |||
| 228399.Aple02000344 | (PF09330) | (plastid) | |||
| 228399.appser1_19020 | (PF00327) | mitochondrial; not used | |||
| 228399.appser1_14530 | (PF02769) (PF00586) | ||||
| 228399.appser1_7560 | PF13718 (PF05127) | ||||
| 228399.appser1_600 | (PF01687) | (mitochondrial) | |||
| 228399.appser1_3860 | (PF08264) | (mitochondrial) | |||
| 228399.Aple02001759 | (PF03484) (PF03147) | ||||
| 228399.Aple02001758 | (PF01409) (PF02912) | ||||
| 228399.Aple02000174 | (PF01743) (PF12627) | ||||
| 228399.Aple02000353 | PF13718 (PF05127) | ||||
| 228399.Aple02001409 | (PF03144) (PF00009) | ||||
| 228399.Aple02001249 | (PF00327) | mitochondrial; not used | |||
| 228399.Aple02001242 | (PF01000) (PF01193) | ||||
| 228399.appser1_15950 | (PF00773) (PF00575) | ||||
| 228399.appser1_4450 | (PF02824) (PF13291) | ||||
| 228399.appser1_3070 | (PF05496) (PF05491) | ||||
| 228399.appser1_12870 | (PF03948) (PF01281) | ||||
| 228399.appser1_18020 | (PF13507) (PF02769) | ||||
| 228399.appser1_6990 | (PF11987) (PF00009) | ||||
| 228399.appser1_16160 | (PF00133) (PF08264) | ||||
| 228399.Aple02000293 | (PF11987) (PF00009) | ||||
| 228399.appser1_19480 | (PF02824) (PF13291) | ||||
| 228399.appser1_16760 | (PF01649) | (mitochondrial) | |||
| 228399.Aple02001527 | (PF01336) (PF00152) | ||||
| 228399.appser1_16300 | (PF03918) | (ER) | |||
| 228399.Aple02001250 | PF03719 PF00333 | ||||
| 228399.appser1_10320 | (PF01743) (PF12627) | ||||
| 228399.appser1_12780 | (PF01479) (PF00849) | ||||
| 228399.appser1_1570 | (PF06418) | (plastid) | |||
| 228399.appser1_450 | (PF03144) (PF00009) | ||||
| 228399.Aple02001737 | (PF00204) (PF00986) | ||||
| 228399.Aple02001399 | (PF00133) (PF08264) | ||||
| 228399.appser1_16790 | (PF03144) (PF00009) | ||||
| 228399.Aple02001068 | (PF00773) (PF00575) | ||||
| 228399.Aple02001260 | (PF02824) (PF13291) | ||||
| 228399.appser1_8200 | (PF00773) (PF00575) | ||||
| 228399.appser1_3430 | (PF01717) | ||||
| 228399.appser1_7000 | (PF02033) | ||||
| 228399.appser1_7910 | (PF13710) | ||||
| 228399.appser1_7590 | (PF00696) | ||||
| 228399.appser1_2410 | (PF02824) | ||||
| 228399.appser1_12530 | PF02367 | ||||
| 228399.appser1_13930 | (PF00575) | ||||
| 228399.Aple02000636 | (PF04127) | ||||
| 228399.Aple02000121 | (PF00849) | ||||
| 228399.Aple02000127 | (PF02403) | ||||
| 228399.Aple02000126 | (PF01668) | ||||
| 228399.appser1_9430 | (PF01121) | ||||
| 228399.Aple02000255 | (PF01207) | ||||
| 228399.Aple02001897 | (PF00209) | ||||
| 228399.Aple02000381 | (PF06071) | ||||
| 228399.Aple02001898 | (PF00209) | ||||
| 228399.Aple02000382 | (PF01195) | ||||
| 228399.Aple02000414 | (PF00308) | ||||
| 228399.Aple02000417 | (PF03462) | ||||
| 228399.Aple02001477 | (PF01171) | ||||
| 228399.Aple02001473 | (PF01171) | ||||
| 228399.appser1_9290 | (PF00849) | ||||
| 228399.appser1_4390 | (PF00156) | ||||
| 228399.Aple02001388 | (PF05167) | ||||
| 228399.appser1_9340 | (PF01668) | ||||
| 228399.appser1_4240 | (PF03449) | ||||
| 228399.appser1_4800 | (PF05496) | ||||
| 228399.appser1_17880 | (PF05025) | ||||
| 228399.Aple02002245 | (PF10150) | ||||
| 228399.appser1_19060 | PF00416 | ||||
| 228399.appser1_3420 | (PF00156) | ||||
| 228399.Aple02002120 | (PF01075) | ||||
| 228399.Aple02000375 | (PF01018) | ||||
| 228399.Aple02000376 | (PF05746) | ||||
| 228399.Aple02000373 | (PF08032) | ||||
| 228399.appser1_19670 | (PF00009) | ||||
| 228399.Aple02000135 | (PF01121) | ||||
| 228399.Aple02000879 | (PF00215) | ||||
| 228399.appser1_2770 | (PF00156) | ||||
| 228399.Aple02000240 | (PF00156) | ||||
| 228399.Aple02000244 | (PF00849) | ||||
| 228399.Aple02000247 | (PF05958) | ||||
| 228399.Aple02000248 | (PF00899) | ||||
| 228399.Aple02000623 | (PF04384) | ||||
| 228399.Aple02000626 | (PF05958) | ||||
| 228399.Aple02000625 | (PF05958) | ||||
| 228399.Aple02001710 | (PF01491) | ||||
| 228399.appser1_21670 | (PF01075) | ||||
| 228399.Aple02000405 | (PF01795) | ||||
| 228399.appser1_250 | (PF01795) | ||||
| 228399.appser1_17200 | (PF02410) | ||||
| 228399.Aple02001354 | (PF00466) | ||||
| 228399.appser1_9350 | (PF02403) | ||||
| 228399.appser1_19070 | PF00411 | ||||
| 228399.Aple02002006 | (PF00575) | ||||
| 228399.Aple02002007 | (PF02224) | ||||
| 228399.Aple02002002 | (PF00215) | ||||
| 228399.appser1_14740 | (PF03848) | ||||
| 228399.Aple02002139 | (PF00203) | ||||
| 228399.Aple02002134 | PF00338 | ||||
| 228399.Aple02002136 | (PF00573) | ||||
| 228399.Aple02002137 | PF00276 | ||||
| 228399.appser1_16220 | (PF05697) | ||||
| 228399.appser1_18060 | (PF05025) | ||||
| 228399.Aple02000892 | (PF05025) | ||||
| 228399.appser1_6060 | (PF07650) | ||||
| 228399.appser1_12350 | (PF01491) | ||||
| 228399.appser1_19440 | (PF01197) | ||||
| 228399.appser1_20920 | (PF03819) | ||||
| 228399.Aple02001708 | PF01755 | ||||
| 228399.Aple02001709 | PF01755 | ||||
| 228399.Aple02001707 | (PF00814) | ||||
| 228399.appser1_21680 | (PF01075) | ||||
| 228399.Aple02001050 | (PF06250) | ||||
| 228399.appser1_10580 | (PF03449) | ||||
| 228399.appser1_5930 | (PF00899) | ||||
| 228399.appser1_10850 | (PF01171) | ||||
| 228399.appser1_3570 | (PF12327) | ||||
| 228399.appser1_12740 | (PF00939) | ||||
| 228399.Aple02002213 | (PF00009) | ||||
| 228399.appser1_7410 | (PF00156) | ||||
| 228399.appser1_1710 | (PF00268) | ||||
| 228399.appser1_12360 | PF01755 | ||||
| 228399.Aple02000268 | (PF00899) | ||||
| 228399.Aple02000641 | (PF03819) | ||||
| 228399.Aple02001840 | (PF03819) | ||||
| 228399.Aple02001842 | (PF08245) | ||||
| 228399.appser1_2620 | (PF01075) | ||||
| 228399.appser1_1130 | (PF13710) | ||||
| 228399.Aple02000466 | (PF00939) | ||||
| 228399.Aple02001115 | (PF00710) | ||||
| 228399.appser1_21080 | (PF05958) | ||||
| 228399.Aple02001025 | (PF01075) | ||||
| 228399.Aple02001021 | (PF01207) | ||||
| 228399.Aple02001935 | (PF01016) | ||||
| 228399.Aple02001934 | (PF00829) | ||||
| 228399.appser1_18610 | (PF03749) | not used | |||
| 228399.Aple02001339 | PF10571 | ||||
| 228399.appser1_20540 | (PF01142) | ||||
| 228399.appser1_3360 | (PF05958) | ||||
| 228399.appser1_3500 | (PF03462) | ||||
| 228399.appser1_11880 | PF08538 | ||||
| 228399.appser1_3180 | (PF00899) | ||||
| 228399.appser1_10930 | (PF01197) | ||||
| 228399.appser1_7240 | (PF12344) | ||||
| 228399.appser1_11150 | PF00312 | ||||
| 228399.Aple02002206 | (PF00156) | ||||
| 228399.appser1_2100 | (PF01075) | ||||
| 228399.Aple02000986 | (PF00707) | ||||
| 228399.Aple02000980 | (PF00849) | ||||
| 228399.appser1_1030 | (PF00849) | ||||
| 228399.appser1_12370 | PF01755 | ||||
| 228399.appser1_13710 | (PF00162) | ||||
| 228399.appser1_1580 | PF10063 | ||||
| 228399.appser1_18860 | PF00276 | ||||
| 228399.Aple02000853 | (PF04488) | ||||
| 228399.Aple02000322 | (PF12344) | ||||
| 228399.Aple02001103 | (PF00268) | ||||
| 228399.Aple02001104 | (PF01207) | ||||
| 228399.Aple02001617 | (PF01197) | ||||
| 228399.Aple02001612 | (PF03602) | ||||
| 228399.appser1_21220 | (PF02677) | ||||
| 228399.appser1_19880 | (PF04488) | ||||
| 228399.Aple02001589 | (PF03819) | ||||
| 228399.appser1_5220 | (PF03595) | ||||
| 228399.appser1_16270 | (PF00009) | ||||
| 228399.appser1_5640 | PF10548 | ||||
| 228399.Aple02001327 | (PF01142) | ||||
| 228399.appser1_2300 | (PF08032) | ||||
| 228399.appser1_18640 | (PF10576) | ||||
| 228399.appser1_2130 | (PF01207) | ||||
| 228399.appser1_18420 | (PF00466) | ||||
| 228399.appser1_6670 | PF00380 | ||||
| 228399.Aple02000924 | (PF02527) | ||||
| 228399.Aple02000990 | (PF02824) | ||||
| 228399.appser1_12380 | (PF00814) | ||||
| 228399.Aple02000194 | (PF02677) | ||||
| 228399.appser1_13630 | (PF01026) | ||||
| 228399.Aple02000205 | (PF00343) | ||||
| 228399.appser1_18850 | (PF00573) | ||||
| 228399.appser1_18920 | (PF00831) | ||||
| 228399.Aple02000338 | (PF00156) | ||||
| 228399.Aple02001622 | (PF01192) | ||||
| 228399.Aple02001000 | PF13518 | ||||
| 228399.Aple02001005 | (PF08032) | ||||
| 228399.appser1_9480 | (PF13541) | ||||
| 228399.appser1_16460 | (PF00152) | ||||
| 228399.appser1_4610 | (PF01075) | ||||
| 228399.appser1_18700 | (PF13541) | ||||
| 228399.appser1_8040 | (PF02224) | ||||
| 228399.appser1_14700 | (PF02881) | ||||
| 228399.appser1_1690 | (PF01207) | ||||
| 228399.Aple02000059 | (PF02410) | ||||
| 228399.appser1_6330 | (PF00889) | ||||
| 228399.Aple02001831 | (PF00814) | ||||
| 228399.appser1_16070 | (PF05167) | ||||
| 228399.appser1_2650 | (PF00696) | ||||
| 228399.appser1_18930 | PF00366 | ||||
| 228399.Aple02000942 | (PF00958) | ||||
| 228399.Aple02000945 | (PF05495) | ||||
| 228399.Aple02000238 | (PF01717) | ||||
| 228399.Aple02001633 | (PF03590) | ||||
| 228399.Aple02000540 | PF01755 | ||||
| 228399.Aple02001019 | (PF00209) | ||||
| 228399.Aple02001123 | (PF05496) | ||||
| 228399.Aple02001940 | (PF00156) | ||||
| 228399.appser1_18430 | (PF16320) | ||||
| 228399.appser1_20420 | PF10571 | ||||
| 228399.appser1_14370 | (PF01479) | ||||
| 228399.appser1_18380 | (PF00584) | ||||
| 228399.appser1_11380 | PF01755 | ||||
| 228399.appser1_19390 | (PF13177) | ||||
| 228399.Aple02002090 | (PF00595) | ||||
| 228399.appser1_3350 | (PF00899) | ||||
| 228399.Aple02002143 | (PF00831) | ||||
| 228399.Aple02002144 | PF00366 | ||||
| 228399.Aple02002147 | (PF17136) | ||||
| 228399.Aple02002146 | PF00238 | ||||
| 228399.appser1_21800 | PF13518 | not used | |||
| 228399.appser1_14710 | (PF03602) | ||||
| 228399.appser1_6850 | (PF00814) | ||||
| 228399.appser1_6580 | (PF00958) | ||||
| 228399.appser1_6320 | (PF00318) | ||||
| 228399.Aple02001801 | (PF13710) | ||||
| 228399.Aple02000285 | (PF08459) | ||||
| 228399.appser1_18940 | PF00238 | ||||
| 228399.Aple02001797 | (PF01336) | ||||
| 228399.Aple02000315 | (PF00710) | ||||
| 228399.Aple02001577 | (PF00575) | ||||
| 228399.Aple02001156 | (PF00950) | ||||
| 228399.appser1_160 | (PF00308) | ||||
| 228399.Aple02001200 | (PF06968) | ||||
| 228399.Aple02001208 | (PF14622) | ||||
| 228399.appser1_5940 | (PF05690) | ||||
| 228399.appser1_17750 | (PF02527) | ||||
| 228399.appser1_7990 | (PF00215) | ||||
| 228399.appser1_19140 | (PF01245) | ||||
| 228399.Aple02002086 | (PF01026) | ||||
| 228399.Aple02002151 | (PF10576) | ||||
| 228399.appser1_7190 | (PF00710) | ||||
| 228399.appser1_10970 | PF13518 | not used | |||
| 228399.appser1_11020 | (PF00268) | ||||
| 228399.appser1_6620 | (PF03222) | ||||
| 228399.appser1_20980 | (PF04127) | ||||
| 228399.appser1_6550 | (PF05495) | ||||
| 228399.appser1_13530 | (PF00343) | ||||
| 228399.appser1_12220 | (PF01336) | ||||
| 228399.Aple02000140 | (PF13541) | ||||
| 228399.Aple02000145 | (PF10576) | ||||
| 228399.appser1_570 | (PF08032) | ||||
| 228399.appser1_18950 | (PF17136) | ||||
| 228399.Aple02000498 | (PF00165) | ||||
| 228399.Aple02001780 | (PF13541) | ||||
| 228399.Aple02000965 | (PF00696) | ||||
| 228399.Aple02000964 | (PF01765) | ||||
| 228399.Aple02000967 | (PF00889) | ||||
| 228399.Aple02000780 | (PF03602) | ||||
| 228399.Aple02000968 | (PF00318) | ||||
| 228399.appser1_480 | (PF01195) | ||||
| 228399.Aple02001902 | (PF02620) | ||||
| 228399.appser1_19600 | (PF03590) | ||||
| 228399.Aple02000562 | PF00312 | ||||
| 228399.Aple02001145 | (PF06968) | ||||
| 228399.Aple02001141 | (PF00303) | ||||
| 228399.Aple02001142 | (PF00303) | ||||
| 228399.appser1_18880 | (PF00203) | ||||
| 228399.Aple02001367 | PF13518 | ||||
| 228399.Aple02000291 | (PF02576) | ||||
| 228399.Aple02001213 | (PF13177) | ||||
| 228399.Aple02001216 | (PF01026) | ||||
| 228399.appser1_5950 | (PF06968) | ||||
| 228399.appser1_10360 | (PF04384) | not used | |||
| 228399.appser1_11900 | (PF05872) | ||||
| 228399.appser1_19280 | (PF05746) | ||||
| 228399.appser1_19350 | (PF01026) | ||||
| 228399.appser1_18180 | (PF00215) | ||||
| 228399.appser1_6940 | (PF03819) | ||||
| 228399.Aple02000872 | (PF03144) | ||||
| 228399.Aple02000020 | (PF00009) | ||||
| 228399.Aple02000808 | (PF00308) | ||||
| 228399.Aple02000370 | (PF01687) | ||||
| 228399.Aple02000978 | (PF03652) | ||||
| 228399.appser1_490 | (PF06071) | ||||
| 228399.Aple02000776 | (PF08211) | ||||
| 228399.Aple02000779 | (PF02881) | ||||
| 228399.Aple02000784 | (PF03848) | ||||
| 228399.Aple02000575 | (PF00268) | ||||
| 228399.appser1_21720 | (PF00009) | ||||
| 228399.Aple02000481 | (PF01250) | ||||
| 228399.appser1_140 | (PF03462) | ||||
| 228399.Aple02001992 | (PF13710) | ||||
| 228399.Aple02001196 | (PF00899) | ||||
| 228399.Aple02001195 | (PF00899) | ||||
| 228399.Aple02001199 | (PF05690) | ||||
| 228399.Aple02001198 | (PF05690) | ||||
| 228399.Aple02001350 | (PF00584) | not used | |||
| 228399.Aple02001355 | (PF16320) | ||||
| 228399.Aple02001426 | PF13518 | ||||
| 228399.appser1_18980 | PF00410 | ||||
| 228399.Aple02001223 | (PF05746) | ||||
| 228399.appser1_15930 | (PF01479) | ||||
| 228399.appser1_3010 | (PF01026) | ||||
| 228399.appser1_3300 | (PF01207) | ||||
| 228399.appser1_14670 | (PF08211) | ||||
| 228399.Aple02002190 | (PF00764) | not used | |||
| 228399.Aple02002194 | (PF00156) | ||||
| 228399.appser1_7040 | (PF13500) | ||||
| 228399.appser1_7550 | PF02130 | ||||
| 228399.appser1_6970 | (PF02576) | ||||
| 228399.Aple02000019 | (PF01029) | ||||
| 228399.appser1_2450 | (PF00707) | ||||
| 228399.appser1_550 | (PF01018) | ||||
| 228399.appser1_21280 | (PF01016) | ||||
| 228399.appser1_14980 | (PF00308) | ||||
| 228399.Aple02001763 | PF13518 | ||||
| 228399.Aple02001764 | (PF13500) | ||||
| 228399.Aple02000909 | (PF05025) | ||||
| 228399.Aple02000743 | (PF01479) | ||||
| 228399.Aple02001690 | PF02367 | ||||
| 228399.Aple02000588 | (PF01197) | ||||
| 228399.Aple02000581 | PF13518 | not used | |||
| 228399.Aple02001507 | (PF00162) | ||||
| 228399.Aple02000586 | PF13518 | ||||
| 228399.appser1_16580 | (PF01171) | ||||
| 228399.appser1_20880 | (PF01715) | ||||
| 228399.Aple02001985 | (PF05958) | ||||
| 228399.Aple02001280 | (PF03449) | ||||
| 228399.appser1_18990 | PF00347 | ||||
| 228399.Aple02001238 | (PF01746) | ||||
| 228399.Aple02001239 | (PF01782) | ||||
| 228399.Aple02001237 | (PF01245) | ||||
| 228399.appser1_21320 | (PF00156) | ||||
| 228399.appser1_10520 | (PF13500) | ||||
| 228399.appser1_2990 | (PF08459) | ||||
| 228399.Aple02002058 | (PF03222) | ||||
| 228399.appser1_12900 | (PF01250) | ||||
| 228399.appser1_6780 | (PF13500) | ||||
| 228399.appser1_19490 | (PF01192) | ||||
| 228399.appser1_2510 | (PF00849) | ||||
| 228399.appser1_6960 | (PF08245) | ||||
| 228399.appser1_540 | (PF05746) | ||||
| 228399.appser1_6360 | (PF01765) | ||||
| 228399.appser1_12300 | (PF05958) | ||||
| 228399.appser1_4650 | (PF00156) | ||||
| 228399.Aple02001751 | PF00380 | ||||
| 228399.Aple02000175 | PF13518 | ||||
| 228399.Aple02000914 | PF13518 | ||||
| 228399.Aple02000590 | PF01755 | ||||
| 228399.Aple02000591 | (PF01075) | ||||
| 228399.Aple02000356 | (PF00696) | ||||
| 228399.Aple02000352 | PF02130 | ||||
| 228399.appser1_1350 | (PF00303) | ||||
| 228399.Aple02000230 | (PF03462) | ||||
| 228399.Aple02001404 | (PF05697) | ||||
| 228399.appser1_21700 | PF00177 | ||||
| 228399.Aple02001248 | PF00828 | ||||
| 228399.Aple02001247 | (PF00344) | ||||
| 228399.Aple02001245 | PF00416 | ||||
| 228399.Aple02001244 | PF00411 | ||||
| 228399.Aple02001241 | (PF01196) | ||||
| 228399.appser1_17400 | (PF03253) | ||||
| 228399.appser1_19100 | (PF01196) | ||||
| 228399.appser1_19030 | PF00828 | ||||
| 228399.Aple02002041 | (PF00849) | ||||
| 228399.Aple02002288 | (PF00950) | not used | |||
| 228399.Aple02002285 | PF02367 | ||||
| 228399.appser1_15120 | (PF02620) | ||||
| 228399.appser1_6350 | (PF00696) | ||||
| 228399.Aple02000295 | (PF01509) | ||||
| 228399.Aple02000294 | (PF02033) | ||||
| 228399.Aple02000292 | (PF13184) | ||||
| 228399.Aple02000298 | (PF13500) | ||||
| 228399.Aple02000437 | (PF06250) | ||||
| 228399.appser1_16780 | (PF01029) | ||||
| 228399.Aple02001411 | PF00177 | ||||
| 228399.Aple02001252 | PF00347 | ||||
| 228399.Aple02001253 | PF00410 | ||||
| 228399.appser1_19130 | (PF01746) | ||||
| 228399.Aple02002075 | (PF00343) | ||||
| 228399.appser1_7010 | (PF01509) | ||||
| 228399.appser1_2880 | (PF00156) | ||||
| 228399.appser1_15150 | (PF00209) | ||||
| 228399.appser1_3840 | (PF00343) | ||||
| 228399.appser1_2530 | (PF03652) | ||||
| 228399.appser1_6980 | (PF13184) | ||||
| 228399.appser1_2150 | (PF00209) | ||||
| 228399.Aple02000608 | (PF13500) | ||||
| 228399.Aple02000602 | (PF03449) | ||||
| 228399.Aple02000284 | (PF01026) | ||||
| 228399.Aple02000937 | (PF03222) | ||||
| 228399.appser1_1370 | (PF06968) | ||||
| 228399.appser1_13120 | (PF04664) | ||||
| 228399.appser1_18830 | PF00338 | ||||
| 228399.Aple02001647 | (PF00696) | ||||
| 228399.Aple02001644 | (PF01075) | ||||
| 228399.Aple02001886 | (PF00156) | ||||
| 228399.Aple02001462 | (PF00152) | ||||
| 228399.appser1_21270 | (PF00829) | ||||
| 228399.appser1_9530 | (PF10576) | ||||
| 228399.Aple02001066 | (PF01479) | ||||
| 228399.Aple02001264 | (PF00156) | ||||
| 228399.appser1_19120 | (PF01782) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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