Metamenu

Effective results for Verrucosispora maris AB-18-032 (eggnog40)

Summary

Number of putative secreted proteins: 169
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 50 eukaryotic-like domains, contained in 169 proteins (3 high, 166 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
263358.VAB18032_12845(PF17102) (PF17103) (PF17101) (PF11380)mitochondrial
263358.VAB18032_18365(PF02018) (PF00553) (PF00331)(ER); ER
263358.VAB18032_04365PF06268 (PF05922) (PF00082)mitochondrial
263358.VAB18032_21915(PF05922) (PF00553) (PF00082)(ER)
263358.VAB18032_18190(PF00553) (PF03664)ER
263358.VAB18032_28061(PF00652) (PF03422)ER
263358.VAB18032_03705(PF00652) (PF12695)mitochondrial
263358.VAB18032_24280(PF05922) (PF00082)mitochondrial
263358.VAB18032_00970(PF07081) (PF03422)ER
263358.VAB18032_00975(PF07081) (PF03422)ER
263358.VAB18032_24150(PF10503) (PF00553)ER
263358.VAB18032_24170(PF00553) (PF00331)mitochondrial
263358.VAB18032_19045(PF13290) (PF00553)ER
263358.VAB18032_09335(PF05922) (PF00082)ER
263358.VAB18032_12850(PF17102) (PF17103) (PF17101) (PF11380)
263358.VAB18032_18495(PF00314) (PF00652)(mitochondrial); (ER)
263358.VAB18032_19655(PF10503) (PF00553)ER
263358.VAB18032_12495(PF05922) (PF00082)mitochondrial; (ER)
263358.VAB18032_28056(PF00652) (PF03422)ER
263358.VAB18032_24330(PF02018) (PF03422)(ER)
263358.VAB18032_10710(PF00331) (PF00652)(ER)
263358.VAB18032_28641(PF05922) (PF00082)mitochondrial
263358.VAB18032_18915(PF02018) (PF03422)ER
263358.VAB18032_12860(PF17102) (PF17103) (PF17101) (PF11380)
263358.VAB18032_14150(PF02018) (PF00553)ER
263358.VAB18032_27006(PF00553)ER
263358.VAB18032_06235(PF00082)ER; plastid
263358.VAB18032_02680(PF13529)ER
263358.VAB18032_17625(PF12695)ER
263358.VAB18032_17620(PF00652)mitochondrial; (ER)
263358.VAB18032_21675(PF00163)(mitochondrial)
263358.VAB18032_00165(PF00246)ER
263358.VAB18032_10890(PF00652)ER
263358.VAB18032_24550(PF00553)ER
263358.VAB18032_24085(PF00553)ER
263358.VAB18032_09090(PF00082)ER
263358.VAB18032_23615(PF08309)mitochondrial
263358.VAB18032_25740(PF00553)ER
263358.VAB18032_18610(PF00553)ER
263358.VAB18032_10910(PF08445)(mitochondrial)
263358.VAB18032_28036(PF03422)ER
263358.VAB18032_01020(PF00163)(mitochondrial)
263358.VAB18032_00250(PF00082)ER
263358.VAB18032_10320(PF00553)ER
263358.VAB18032_03700(PF00652) (PF03664) (PF00331)
263358.VAB18032_03875(PF00652)(mitochondrial); mitochondrial
263358.VAB18032_02470(PF00082)ER
263358.VAB18032_13330(PF00652)mitochondrial; (mitochondrial)
263358.VAB18032_18515(PF00652)mitochondrial
263358.VAB18032_18510(PF00082)ER
263358.VAB18032_05985(PF00246)mitochondrial; ER
263358.VAB18032_29086(PF00553)(ER); ER
263358.VAB18032_29081(PF02709)mitochondrial
263358.VAB18032_13185(PF00553)ER
263358.VAB18032_10720(PF00652)ER
263358.VAB18032_19060(PF00331)(ER); ER
263358.VAB18032_22385(PF13290) (PF00246)(ER)
263358.VAB18032_11730(PF00246)ER
263358.VAB18032_13555(PF00553)ER
263358.VAB18032_12790(PF13529)mitochondrial
263358.VAB18032_07990(PF03318)ER
263358.VAB18032_18960(PF00246)ER
263358.VAB18032_13820(PF13529)(mitochondrial)
263358.VAB18032_27406(PF08309)ER
263358.VAB18032_27421(PF10503)ER
263358.VAB18032_26305(PF00553)mitochondrial
263358.VAB18032_28176(PF13529)mitochondrial
263358.VAB18032_12745(PF00553)ER
263358.VAB18032_19530(PF00652)ER
263358.VAB18032_25085(PF00553)ER
263358.VAB18032_18185(PF00553)(mitochondrial)
263358.VAB18032_18980(PF02128)(mitochondrial); plastid
263358.VAB18032_25710(PF00553)ER
263358.VAB18032_23350(PF00246)(mitochondrial)
263358.VAB18032_25770(PF13529)mitochondrial
263358.VAB18032_27736(PF08309)ER
263358.VAB18032_29821(PF00553)ER
263358.VAB18032_29826(PF03422)mitochondrial
263358.VAB18032_02910(PF00082)ER
263358.VAB18032_18600(PF13290) (PF00246)(plastid)
263358.VAB18032_03535(PF00082)ER
263358.VAB18032_24335(PF02018)mitochondrial
263358.VAB18032_10485PF01357ER
263358.VAB18032_18310(PF03422)ER
263358.VAB18032_18870(PF08309)(mitochondrial); (ER)
263358.VAB18032_14255(PF00553)(ER)
263358.VAB18032_10050(PF12740)(ER)
263358.VAB18032_13505(PF08326)mitochondrial; (mitochondrial)
263358.VAB18032_11290(PF00553)ER
263358.VAB18032_13620(PF00553)ER
263358.VAB18032_10715(PF00652)ER
263358.VAB18032_22475(PF00553)ER
263358.VAB18032_00775(PF00652)ER
263358.VAB18032_23725(PF00082)ER
263358.VAB18032_03665(PF03664)mitochondrial
263358.VAB18032_19955(PF10503)ER
263358.VAB18032_21810(PF00891)(ER)
263358.VAB18032_02115(PF00082)ER; (ER)
263358.VAB18032_21370(PF02026)ER
263358.VAB18032_26415(PF05922) (PF00082)plastid
263358.VAB18032_04565(PF14216)plastid
263358.VAB18032_19645(PF00553)(ER)
263358.VAB18032_23980(PF00082)(mitochondrial)
263358.VAB18032_18340(PF00652)(plastid)
263358.VAB18032_13335(PF00246)plastid
263358.VAB18032_04790(PF05922) (PF00082)
263358.VAB18032_02245(PF00082)(ER)
263358.VAB18032_03490(PF00082)(plastid)
263358.VAB18032_25570(PF10503)(ER)
263358.VAB18032_24370(PF06202)(ER)
263358.VAB18032_20140(PF00652)plastid
263358.VAB18032_18975(PF02128)(plastid)
263358.VAB18032_02095(PF02036)
263358.VAB18032_14810(PF08445)
263358.VAB18032_25520(PF00553)
263358.VAB18032_20745(PF08445)
263358.VAB18032_29066(PF02709)
263358.VAB18032_07485(PF06202)
263358.VAB18032_13285(PF13023)
263358.VAB18032_26370(PF00246)
263358.VAB18032_06275(PF01847)
263358.VAB18032_26215(PF11338)
263358.VAB18032_25010(PF00082)
263358.VAB18032_29811(PF07081)
263358.VAB18032_24825(PF00891)
263358.VAB18032_18130(PF00891)
263358.VAB18032_25225(PF06202)
263358.VAB18032_22670(PF01668)
263358.VAB18032_26561(PF08445)
263358.VAB18032_17380(PF01234)
263358.VAB18032_21820(PF03301)
263358.VAB18032_21825(PF03301)
263358.VAB18032_17300(PF05706)
263358.VAB18032_07220(PF13826)
263358.VAB18032_29121(PF02036)
263358.VAB18032_06935(PF13826)
263358.VAB18032_02100(PF06202)
263358.VAB18032_03475(PF00648)
263358.VAB18032_01530(PF00553)
263358.VAB18032_01750(PF08445)
263358.VAB18032_05270(PF02036)
263358.VAB18032_06990(PF00891)
263358.VAB18032_23250(PF09359)
263358.VAB18032_15355(PF02036)
263358.VAB18032_12970(PF00553)
263358.VAB18032_07040(PF00891)
263358.VAB18032_23315(PF13023)
263358.VAB18032_12245(PF03161)
263358.VAB18032_10650(PF02709)
263358.VAB18032_01815PF08213not used
263358.VAB18032_13320(PF13023)
263358.VAB18032_22620(PF02036)
263358.VAB18032_08010(PF13246)
263358.VAB18032_24600(PF02036)
263358.VAB18032_08755(PF01789)
263358.VAB18032_15295(PF13246)
263358.VAB18032_19050(PF09359)
263358.VAB18032_29116(PF06202)
263358.VAB18032_14870(PF00331)
263358.VAB18032_19930(PF00102)
263358.VAB18032_08890(PF00082)
263358.VAB18032_25810(PF03936)
263358.VAB18032_09875(PF00652)
263358.VAB18032_29366(PF00553)
263358.VAB18032_18030(PF00891)
263358.VAB18032_28776(PF03301)
263358.VAB18032_09810(PF01668)
263358.VAB18032_29991(PF12740)
263358.VAB18032_23040(PF11338)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================