Metamenu

Effective results for Synechococcus sp. JA-3-3Ab (eggnog40)

Summary

Number of putative secreted proteins: 209
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 104 eukaryotic-like domains, contained in 209 proteins (42 high, 167 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
321327.CYA_2573(PF07282) PF12323(mitochondrial); (plastid)
321327.CYA_1938(PF07282) PF12323mitochondrial; (mitochondrial)
321327.CYA_1956(PF07282) PF12323(mitochondrial)
321327.CYA_2001(PF07282) PF12323(mitochondrial); (plastid)
321327.CYA_1977(PF07282) PF12323mitochondrial
321327.CYA_1471(PF07282) PF12323mitochondrial; (mitochondrial)
321327.CYA_2249(PF07282) PF12323(mitochondrial); (plastid)
321327.CYA_1890(PF07282) PF12323(mitochondrial); (plastid)
321327.CYA_2685(PF07282) PF12323mitochondrial; (mitochondrial)
321327.CYA_1404(PF16639) (PF01333)ER
321327.CYA_2440(PF07282) PF12323(mitochondrial)
321327.CYA_1438(PF07282) PF12323(mitochondrial); (plastid)
321327.CYA_2695(PF07282) PF12323mitochondrial; (mitochondrial)
321327.CYA_1646(PF07282) PF12323(mitochondrial)
321327.CYA_2424(PF07282) PF12323(mitochondrial)
321327.CYA_0596(PF07282) PF12323(mitochondrial)
321327.CYA_0777(PF07282) PF12323(mitochondrial)
321327.CYA_2430(PF00284) (PF00283)(ER)
321327.CYA_0345(PF07282) PF12323(mitochondrial)
321327.CYA_0807(PF07282) PF12323(mitochondrial)
321327.CYA_1375(PF07282) PF12323(mitochondrial)
321327.CYA_0395(PF07282) PF12323(mitochondrial); (plastid)
321327.CYA_2393(PF07282) PF12323(mitochondrial)
321327.CYA_1773(PF07282) PF12323(mitochondrial)
321327.CYA_0726(PF07282) PF12323(mitochondrial)
321327.CYA_2577(PF11460)ER
321327.CYA_2578(PF10716)ER
321327.CYA_1716(PF11317)ER
321327.CYA_1001(PF11016)ER
321327.CYA_1927(PF11282)ER
321327.CYA_2036(PF12046)ER
321327.CYA_0295(PF02507)ER
321327.CYA_1103(PF11805)(mitochondrial); plastid
321327.CYA_0678(PF01169)ER; (ER)
321327.CYA_2359(PF00421)mitochondrial
321327.CYA_1939(PF11152)(ER); ER
321327.CYA_1118(PF08695)(ER)
321327.CYA_2642(PF03092)(mitochondrial)
321327.CYA_0644(PF00421)(mitochondrial)
321327.CYA_0090(PF01737)ER
321327.CYA_0091(PF07282)(mitochondrial); (plastid)
321327.CYA_1689(PF02366)ER
321327.CYA_2795(PF04278)mitochondrial
321327.CYA_2798(PF13326)ER
321327.CYA_0121(PF12159)ER
321327.CYA_0122(PF10693)(ER)
321327.CYA_2682PF05757ER
321327.CYA_2449(PF03647)ER
321327.CYA_1326(PF00737)(mitochondrial)
321327.CYA_1080(PF02366)ER
321327.CYA_0694(PF13301)ER
321327.CYA_2423(PF01169)(mitochondrial); plastid
321327.CYA_1355PF11347ER
321327.CYA_1359PF12323(mitochondrial)
321327.CYA_1748(PF00124)(mitochondrial)
321327.CYA_0712(PF13301)ER
321327.CYA_2097(PF06514)ER
321327.CYA_0569(PF12600)ER
321327.CYA_0706(PF01169)ER; (ER)
321327.CYA_0389(PF00504)ER
321327.CYA_0034(PF01169)ER
321327.CYA_2176(PF11264)(mitochondrial)
321327.CYA_1943(PF01789)ER
321327.CYA_1233(PF01716)ER
321327.CYA_1380(PF01947)ER
321327.CYA_1959(PF07282) PF12323
321327.CYA_0444(PF01457)(plastid)
321327.CYA_1136(PF07282) PF12323
321327.CYA_2439(PF00239)(mitochondrial)
321327.CYA_2560(PF03040)(plastid)
321327.CYA_1585(PF07282)(mitochondrial)
321327.CYA_2581(PF07282) PF12323
321327.CYA_0981(PF07282)(mitochondrial)
321327.CYA_2636(PF07282) PF12323
321327.CYA_0858(PF04481)mitochondrial
321327.CYA_1933(PF02533)ER; not used
321327.CYA_1028(PF11909)(mitochondrial)
321327.CYA_1029(PF12617)(plastid)
321327.CYA_2010(PF13518)(mitochondrial)
321327.CYA_1279(PF13518)(mitochondrial)
321327.CYA_0259(PF06298)ER; not used
321327.CYA_2063(PF07282) PF12323
321327.CYA_1311(PF13518)(mitochondrial)
321327.CYA_1325(PF02468)ER; not used
321327.CYA_0427(PF00101)(ER)
321327.CYA_0687(PF07282)(mitochondrial)
321327.CYA_0331(PF04839)(ER)
321327.CYA_0204(PF02427)(mitochondrial)
321327.CYA_2845(PF13518)(mitochondrial)
321327.CYA_1181(PF07282) PF12323
321327.CYA_2722(PF13518)(mitochondrial)
321327.CYA_0767(PF07282)(mitochondrial)
321327.CYA_0226(PF07282) PF12323
321327.CYA_2158(PF07282)(mitochondrial)
321327.CYA_0158(PF07282) PF12323
321327.CYA_1614(PF00101)(plastid)
321327.CYA_0704(PF07282)(mitochondrial)
321327.CYA_0430(PF11623)(ER)
321327.CYA_0037(PF13518)(mitochondrial)
321327.CYA_1604(PF13518)(mitochondrial)
321327.CYA_2604PF02605 (PF00421)
321327.CYA_0053(PF13518)(mitochondrial)
321327.CYA_2572(PF00239)
321327.CYA_0536(PF02531)
321327.CYA_1849(PF00124)
321327.CYA_1485(PF02392)
321327.CYA_1487(PF11378)
321327.CYA_1133(PF11341)
321327.CYA_0661(PF06206)
321327.CYA_2568(PF06206)
321327.CYA_1850(PF05491)
321327.CYA_1037(PF16166)
321327.CYA_0293PF02605
321327.CYA_0294(PF01701)not used
321327.CYA_1457(PF02366)
321327.CYA_2357(PF08041)not used
321327.CYA_2358(PF00124)
321327.CYA_1937(PF00239)
321327.CYA_2002(PF00239)
321327.CYA_2647(PF00124)
321327.CYA_0645(PF01405)not used
321327.CYA_0642(PF05151)not used
321327.CYA_0887(PF07282)
321327.CYA_1439(PF00239)
321327.CYA_2343(PF07282)
321327.CYA_2834(PF00504)not used
321327.CYA_0507(PF13301)
321327.CYA_2012(PF07282)
321327.CYA_1472(PF00239)
321327.CYA_1870(PF12204)
321327.CYA_0654(PF14249)
321327.CYA_0896(PF14249)
321327.CYA_1274(PF00124)
321327.CYA_0096(PF10674)
321327.CYA_2331(PF01744)
321327.CYA_2482(PF12049)
321327.CYA_2245(PF10184)
321327.CYA_2241(PF08847)
321327.CYA_2070(PF11210)
321327.CYA_2069(PF10664)
321327.CYA_2664(PF02529)not used
321327.CYA_2750(PF02941)
321327.CYA_1862(PF01765)
321327.CYA_2250(PF00239)
321327.CYA_2787(PF11947)
321327.CYA_0410(PF04983)
321327.CYA_0411(PF04983)
321327.CYA_1891(PF00239)
321327.CYA_0231(PF12527)
321327.CYA_2044(PF06206)
321327.CYA_2040(PF03130)
321327.CYA_1660(PF05277)
321327.CYA_2684(PF00239)
321327.CYA_0205(PF00504)not used
321327.CYA_0113(PF03130)
321327.CYA_2694(PF00239)
321327.CYA_0217(PF03130)
321327.CYA_1341(PF12095)
321327.CYA_0695PF11347
321327.CYA_0690(PF07282)
321327.CYA_1645(PF00239)
321327.CYA_1642(PF07282)
321327.CYA_2427(PF01788)not used
321327.CYA_2425(PF00239)
321327.CYA_2429(PF00283)not used
321327.CYA_2428PF02419not used
321327.CYA_0595(PF00239)
321327.CYA_2034(PF07282)
321327.CYA_1744(PF05421)
321327.CYA_0346(PF00239)
321327.CYA_0013(PF09353)
321327.CYA_1196(PF00101)
321327.CYA_1195(PF02341)
321327.CYA_2406(PF06799)
321327.CYA_0808(PF00239)
321327.CYA_0573(PF11360)
321327.CYA_1374(PF00239)
321327.CYA_0620(PF07282)
321327.CYA_0397(PF00239)
321327.CYA_1402(PF11267)
321327.CYA_2892(PF11833)
321327.CYA_2522(PF00223)
321327.CYA_2521(PF00223)
321327.CYA_1812(PF05491)
321327.CYA_1811(PF00124)
321327.CYA_0703(PF01765)
321327.CYA_0707(PF03652)
321327.CYA_0494(PF11998)
321327.CYA_0142(PF00504)
321327.CYA_0383(PF07082)
321327.CYA_0036(PF00796)not used
321327.CYA_0035PF02605
321327.CYA_2558PF06596not used
321327.CYA_1607(PF11910)
321327.CYA_2557(PF02943)
321327.CYA_2392(PF00239)
321327.CYA_1772(PF00239)
321327.CYA_2776PF03742not used
321327.CYA_0739(PF07282)
321327.CYA_2606(PF00421)
321327.CYA_2601(PF02943)
321327.CYA_2600PF06596not used
321327.CYA_0047(PF03130)
321327.CYA_0544(PF05969)not used
321327.CYA_2765(PF02532)not used
321327.CYA_0727(PF00239)
321327.CYA_1236(PF03652)
321327.CYA_1384(PF08855)
321327.CYA_0059(PF10999)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================