Effective results for Akkermansia muciniphila ATCC BAA-835 (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 43 proteins (7 high, 36 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
349741.Amuc_0060				(PF12972) (PF12971) (PF05089)	ER
349741.Amuc_1220				(PF12972) (PF12971) (PF05089)	(ER)
349741.Amuc_2018				(PF02838) (PF00728)	ER
349741.Amuc_2019				(PF02838) (PF00728)	ER
349741.Amuc_1924				(PF02838) (PF00728)	ER
349741.Amuc_1669				(PF02838) (PF00728)	ER
349741.Amuc_0868				(PF02838) (PF00728)	ER
349741.Amuc_1815				(PF02838) (PF00728)	ER
349741.Amuc_1032				(PF02838) (PF00728)	ER
349741.Amuc_2136				(PF02838) (PF00728)	ER
349741.Amuc_0397				(PF02838) (PF00728)	ER
349741.Amuc_0369				(PF02838) (PF00728)	ER
349741.Amuc_0451				(PF07691)	ER
349741.Amuc_0525				(PF00432)	ER
349741.Amuc_0627				PF13402	ER
349741.Amuc_0052				(PF02838)	ER; (ER)
349741.Amuc_1141				(PF01531)	(ER)
349741.Amuc_0908				PF13402	ER
349741.Amuc_2087				(PF01531)	ER; (ER)
349741.Amuc_0517				PF05691	ER
349741.Amuc_1651				(PF04450)	ER
349741.Amuc_1960				(PF07691)	ER
349741.Amuc_0942				(PF01531)	(ER)
349741.Amuc_1142				PF01762	(ER)
349741.Amuc_0953				(PF07691)	ER
349741.Amuc_1423				(PF03983)	mitochondrial
349741.Amuc_2148				(PF00728)	ER
349741.Amuc_1124				(PF00432)
349741.Amuc_1123				(PF00432)
349741.Amuc_0084				(PF07691)
349741.Amuc_0634				(PF01501)
349741.Amuc_2001				PF13402
349741.Amuc_1252				(PF12437)
349741.Amuc_0939				(PF01501)
349741.Amuc_1514				PF13402
349741.Amuc_1342				(PF07691)
349741.Amuc_0251				(PF07691)
349741.Amuc_0753				(PF01501)
349741.Amuc_0378				(PF03983)
349741.Amuc_1258				(PF12437)
349741.Amuc_0762				(PF00852)
349741.Amuc_0760				(PF00852)
349741.Amuc_2038				PF04845

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================