Metamenu

Effective results for Flavobacteriales bacterium ALC-1 (eggnog40)

Summary

Number of putative secreted proteins: 110
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 34 eukaryotic-like domains, contained in 110 proteins (7 high, 103 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391603.FBALC1_13072(PF14684) (PF07676) (PF03572)ER
391603.FBALC1_11382(PF14684) (PF07676) (PF03572)ER
391603.FBALC1_07473(PF14684) (PF07676) (PF03572)ER
391603.FBALC1_13522(PF11918) (PF03572)ER
391603.FBALC1_14752PF00332ER
391603.FBALC1_03027(PF03572)ER
391603.FBALC1_04852(PF12895)ER
391603.FBALC1_09997(PF12893)ER
391603.FBALC1_12932(PF07676)ER
391603.FBALC1_00120(PF08570)ER
391603.FBALC1_04137(PF12388)ER
391603.FBALC1_05448(PF07593)ER
391603.FBALC1_10867(PF07786)ER
391603.FBALC1_06888(PF08787)ER
391603.FBALC1_04632(PF14938)ER
391603.FBALC1_01757(PF06452)ER
391603.FBALC1_01752(PF07593)ER
391603.FBALC1_17167(PF03572)ER
391603.FBALC1_08003(PF11954)ER
391603.FBALC1_05318(PF13905)ER
391603.FBALC1_04577(PF10988)ER
391603.FBALC1_09018(PF16313)ER
391603.FBALC1_07313(PF16313)ER
391603.FBALC1_02687(PF07593)ER
391603.FBALC1_12647(PF07786)(ER)
391603.FBALC1_09537(PF11954)ER
391603.FBALC1_11297(PF12388)ER
391603.FBALC1_15277(PF06452)ER
391603.FBALC1_09497(PF13884)ER
391603.FBALC1_07883(PF06452)ER
391603.FBALC1_06848(PF14592)ER
391603.FBALC1_16342(PF11954)ER
391603.FBALC1_09482(PF13905)ER
391603.FBALC1_00025(PF03572)ER
391603.FBALC1_12197(PF11954)ER
391603.FBALC1_10212(PF05935)ER
391603.FBALC1_17017(PF07676)ER
391603.FBALC1_14052(PF16313)mitochondrial
391603.FBALC1_14477(PF10988)ER
391603.FBALC1_15652(PF00045)ER
391603.FBALC1_13822(PF07676)ER
391603.FBALC1_11977(PF15902)ER
391603.FBALC1_10972(PF07676)ER
391603.FBALC1_06073(PF10988)ER
391603.FBALC1_14912(PF07676)ER
391603.FBALC1_05358(PF13905)ER
391603.FBALC1_09582(PF12893)ER
391603.FBALC1_09053(PF15902)ER
391603.FBALC1_09727(PF03572)ER
391603.FBALC1_12547(PF13884)ER
391603.FBALC1_12542(PF13884)ER
391603.FBALC1_11082(PF10988)ER
391603.FBALC1_05438(PF15902)ER
391603.FBALC1_02577(PF03266)(mitochondrial)
391603.FBALC1_07508(PF07593)ER
391603.FBALC1_16812(PF07593)ER
391603.FBALC1_06498(PF01094)ER
391603.FBALC1_00702(PF15902)ER
391603.FBALC1_06838(PF08787)ER
391603.FBALC1_17262(PF08570)ER
391603.FBALC1_06803(PF08787)ER
391603.FBALC1_13812(PF07593)ER
391603.FBALC1_12572(PF13884)ER
391603.FBALC1_06813(PF14592)ER
391603.FBALC1_06818(PF08787)ER
391603.FBALC1_15697(PF03572)ER
391603.FBALC1_11807(PF07676)ER
391603.FBALC1_16472(PF07676)ER
391603.FBALC1_16477(PF13905)ER
391603.FBALC1_11932(PF06452)ER; (ER)
391603.FBALC1_12582(PF13884)ER
391603.FBALC1_04917(PF12388)ER
391603.FBALC1_13462(PF05935)ER
391603.FBALC1_00577(PF03572)ER
391603.FBALC1_11927(PF07676)ER
391603.FBALC1_06633(PF07676)ER
391603.FBALC1_14747PF00332ER
391603.FBALC1_16677(PF07593)ER
391603.FBALC1_05088(PF07676)mitochondrial; (mitochondrial)
391603.FBALC1_08773(PF15902)ER
391603.FBALC1_16292(PF15902)ER
391603.FBALC1_16457(PF07676)ER
391603.FBALC1_02522(PF04784)ER
391603.FBALC1_01762(PF12893)ER
391603.FBALC1_10322(PF04784)(plastid)
391603.FBALC1_15022PF00431
391603.FBALC1_01262(PF08695)
391603.FBALC1_05983(PF12895)
391603.FBALC1_09757(PF11954)
391603.FBALC1_13722(PF12895)
391603.FBALC1_07598(PF13905)
391603.FBALC1_00070(PF10988)
391603.FBALC1_12652(PF07786)
391603.FBALC1_11677(PF03572)
391603.FBALC1_14727PF00332
391603.FBALC1_14732PF00332
391603.FBALC1_06063(PF10988)
391603.FBALC1_13012PF00431
391603.FBALC1_03757(PF02873)
391603.FBALC1_03197(PF02873)
391603.FBALC1_11962PF14580
391603.FBALC1_11957(PF16095)
391603.FBALC1_00175(PF02130)
391603.FBALC1_03152(PF09834)
391603.FBALC1_12152(PF07766)
391603.FBALC1_17302(PF02130)
391603.FBALC1_15742(PF09834)
391603.FBALC1_06388(PF12893)
391603.FBALC1_16867(PF07786)
391603.FBALC1_17217(PF10988)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================