Effective results for Sphingobacterium spiritivorum ATCC 33861 (eggnog40)
Summary
Number of putative secreted proteins: 224
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 39 eukaryotic-like domains, contained in 224 proteins (9 high, 215 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 525373.HMPREF0766_11379 | (PF00728) (PF02838) | ER | |||
| 525373.HMPREF0766_10178 | (PF11958) PF16871 | ER | |||
| 525373.HMPREF0766_11467 | (PF08124) (PF02884) | ER | |||
| 525373.HMPREF0766_11252 | (PF00728) (PF02838) | ER | |||
| 525373.HMPREF0766_13696 | (PF09112) (PF09113) | ER | |||
| 525373.HMPREF0766_10556 | (PF00728) (PF02838) | ER; (ER) | |||
| 525373.HMPREF0766_13025 | (PF00728) (PF02838) | ER | |||
| 525373.HMPREF0766_13329 | (PF08124) (PF02884) | ER | |||
| 525373.HMPREF0766_14203 | (PF00728) (PF02838) | ER | |||
| 525373.HMPREF0766_11004 | (PF00728) (PF02838) | ER | |||
| 525373.HMPREF0766_14228 | (PF07971) (PF14683) | ER | |||
| 525373.HMPREF0766_13045 | (PF12708) | ER | |||
| 525373.HMPREF0766_13604 | (PF07715) | ER | |||
| 525373.HMPREF0766_13603 | (PF00388) | ER | |||
| 525373.HMPREF0766_13608 | (PF07715) | ER | |||
| 525373.HMPREF0766_13262 | (PF07715) | (ER) | |||
| 525373.HMPREF0766_13466 | (PF07715) | ER | |||
| 525373.HMPREF0766_13865 | (PF03415) | ER | |||
| 525373.HMPREF0766_11632 | (PF07715) | ER | |||
| 525373.HMPREF0766_10724 | (PF07715) | ER | |||
| 525373.HMPREF0766_11752 | (PF07715) | ER | |||
| 525373.HMPREF0766_10274 | (PF07715) | ER | |||
| 525373.HMPREF0766_13675 | (PF07715) | ER | |||
| 525373.HMPREF0766_11655 | (PF01120) | ER | |||
| 525373.HMPREF0766_12037 | (PF07715) | ER | |||
| 525373.HMPREF0766_11797 | (PF06439) | ER | |||
| 525373.HMPREF0766_11136 | (PF07715) | (mitochondrial) | |||
| 525373.HMPREF0766_13923 | (PF07715) | ER | |||
| 525373.HMPREF0766_11626 | (PF06439) | ER | |||
| 525373.HMPREF0766_11628 | (PF13905) | ER | |||
| 525373.HMPREF0766_10286 | (PF07715) | (ER); plastid | |||
| 525373.HMPREF0766_10285 | (PF01120) | ER | |||
| 525373.HMPREF0766_10282 | (PF01120) | ER | |||
| 525373.HMPREF0766_10280 | (PF07715) | ER | |||
| 525373.HMPREF0766_10047 | (PF07715) | ER | |||
| 525373.HMPREF0766_12755 | (PF07715) | ER | |||
| 525373.HMPREF0766_13934 | (PF07971) | ER | |||
| 525373.HMPREF0766_10677 | (PF07715) | ER | |||
| 525373.HMPREF0766_10674 | (PF04450) | ER | |||
| 525373.HMPREF0766_10675 | (PF07971) | ER | |||
| 525373.HMPREF0766_10673 | (PF07971) | ER | |||
| 525373.HMPREF0766_10685 | (PF07715) | ER | |||
| 525373.HMPREF0766_14360 | (PF07715) | ER | |||
| 525373.HMPREF0766_13128 | (PF07715) | ER | |||
| 525373.HMPREF0766_13010 | (PF07715) | (mitochondrial) | |||
| 525373.HMPREF0766_13839 | PF13402 | ER | |||
| 525373.HMPREF0766_12523 | PF04733 | ER | |||
| 525373.HMPREF0766_12745 | (PF07715) | ER | |||
| 525373.HMPREF0766_13903 | (PF07715) | ER | |||
| 525373.HMPREF0766_11643 | (PF07715) | (mitochondrial); mitochondrial | |||
| 525373.HMPREF0766_13441 | (PF07715) | mitochondrial | |||
| 525373.HMPREF0766_14020 | (PF06439) | ER | |||
| 525373.HMPREF0766_12992 | (PF07715) | ER | |||
| 525373.HMPREF0766_11463 | (PF07470) | ER | |||
| 525373.HMPREF0766_11707 | PF16871 | ER | |||
| 525373.HMPREF0766_13918 | (PF07715) | mitochondrial | |||
| 525373.HMPREF0766_11851 | (PF13415) | ER | |||
| 525373.HMPREF0766_10611 | (PF13905) | ER | |||
| 525373.HMPREF0766_10612 | (PF06439) | ER | |||
| 525373.HMPREF0766_10617 | PF13402 | (mitochondrial) | |||
| 525373.HMPREF0766_10856 | (PF07715) | ER | |||
| 525373.HMPREF0766_11183 | (PF07715) | ER | |||
| 525373.HMPREF0766_11181 | (PF02469) | ER | |||
| 525373.HMPREF0766_11180 | (PF02469) | ER | |||
| 525373.HMPREF0766_11187 | (PF07470) | ER | |||
| 525373.HMPREF0766_11184 | (PF02469) | ER | |||
| 525373.HMPREF0766_10106 | (PF01120) | ER | |||
| 525373.HMPREF0766_10580 | (PF07715) | ER | |||
| 525373.HMPREF0766_12980 | (PF07715) | ER | |||
| 525373.HMPREF0766_11691 | (PF07470) | ER | |||
| 525373.HMPREF0766_14347 | (PF01120) | ER | |||
| 525373.HMPREF0766_13362 | (PF07715) | ER | |||
| 525373.HMPREF0766_11204 | (PF07715) | ER | |||
| 525373.HMPREF0766_10626 | (PF07715) | ER | |||
| 525373.HMPREF0766_10622 | (PF07715) | ER | |||
| 525373.HMPREF0766_10821 | (PF07715) | ER | |||
| 525373.HMPREF0766_11192 | (PF12708) | ER | |||
| 525373.HMPREF0766_11193 | (PF12708) | (ER) | |||
| 525373.HMPREF0766_10312 | (PF01120) | ER | |||
| 525373.HMPREF0766_12379 | (PF14771) | ER | |||
| 525373.HMPREF0766_13752 | (PF01120) | ER | |||
| 525373.HMPREF0766_13682 | (PF07715) | ER | |||
| 525373.HMPREF0766_12792 | (PF06439) | ER | |||
| 525373.HMPREF0766_12791 | (PF07715) | ER | |||
| 525373.HMPREF0766_13979 | (PF01120) | ER | |||
| 525373.HMPREF0766_11058 | (PF07715) | ER | |||
| 525373.HMPREF0766_11832 | (PF07715) | ER | |||
| 525373.HMPREF0766_10498 | (PF07715) | ER | |||
| 525373.HMPREF0766_13169 | (PF07715) | ER | |||
| 525373.HMPREF0766_12366 | (PF07715) | ER | |||
| 525373.HMPREF0766_12367 | (PF06439) | ER | |||
| 525373.HMPREF0766_13413 | (PF07715) | ER | |||
| 525373.HMPREF0766_13419 | (PF07715) | ER | |||
| 525373.HMPREF0766_13418 | PF13402 | ER | |||
| 525373.HMPREF0766_12095 | PF13402 | ER | |||
| 525373.HMPREF0766_12098 | (PF02469) | ER | |||
| 525373.HMPREF0766_11822 | (PF07715) | ER | |||
| 525373.HMPREF0766_11826 | (PF07715) | ER | |||
| 525373.HMPREF0766_11229 | PF13402 | ER | |||
| 525373.HMPREF0766_10806 | (PF07715) | ER | |||
| 525373.HMPREF0766_10155 | (PF07715) | ER | |||
| 525373.HMPREF0766_12952 | (PF06439) | ER | |||
| 525373.HMPREF0766_14075 | (PF07715) | ER | |||
| 525373.HMPREF0766_14319 | (PF07715) | ER | |||
| 525373.HMPREF0766_10205 | (PF05686) | mitochondrial | |||
| 525373.HMPREF0766_10203 | (PF13905) | ER | |||
| 525373.HMPREF0766_13573 | (PF13905) | ER | |||
| 525373.HMPREF0766_13794 | (PF07715) | ER | |||
| 525373.HMPREF0766_11145 | (PF07715) | ER | |||
| 525373.HMPREF0766_11963 | (PF13905) | ER | |||
| 525373.HMPREF0766_11965 | (PF07715) | (ER) | |||
| 525373.HMPREF0766_11814 | (PF07715) | ER | |||
| 525373.HMPREF0766_11819 | (PF07715) | ER | |||
| 525373.HMPREF0766_11363 | (PF07715) | ER | |||
| 525373.HMPREF0766_11494 | (PF13650) | ER | |||
| 525373.HMPREF0766_10140 | (PF07715) | mitochondrial | |||
| 525373.HMPREF0766_13541 | (PF07715) | ER | |||
| 525373.HMPREF0766_13434 | (PF07715) | ER | |||
| 525373.HMPREF0766_12052 | (PF07715) | ER | |||
| 525373.HMPREF0766_12936 | (PF07715) | ER | |||
| 525373.HMPREF0766_14058 | (PF07715) | (mitochondrial) | |||
| 525373.HMPREF0766_14200 | (PF07715) | (ER) | |||
| 525373.HMPREF0766_14204 | (PF00728) | ER | |||
| 525373.HMPREF0766_13558 | (PF13650) | ER | |||
| 525373.HMPREF0766_11013 | (PF07715) | (mitochondrial); (plastid) | |||
| 525373.HMPREF0766_12595 | (PF07715) | ER | |||
| 525373.HMPREF0766_11165 | (PF07715) | ER | |||
| 525373.HMPREF0766_10166 | (PF13905) | (ER) | |||
| 525373.HMPREF0766_10165 | (PF03415) | ER | |||
| 525373.HMPREF0766_11322 | (PF07715) | mitochondrial | |||
| 525373.HMPREF0766_10506 | (PF07715) | ER | |||
| 525373.HMPREF0766_10695 | (PF12708) | ER | |||
| 525373.HMPREF0766_14210 | (PF07715) | ER | |||
| 525373.HMPREF0766_12102 | (PF02469) | ER | |||
| 525373.HMPREF0766_12100 | (PF07715) | ER | |||
| 525373.HMPREF0766_12104 | (PF07715) | ER | |||
| 525373.HMPREF0766_12211 | (PF06439) | ER | |||
| 525373.HMPREF0766_13855 | (PF13650) | ER | |||
| 525373.HMPREF0766_11177 | (PF07715) | ER | |||
| 525373.HMPREF0766_11179 | (PF07715) | ER | |||
| 525373.HMPREF0766_12918 | (PF07715) | ER | |||
| 525373.HMPREF0766_12915 | (PF07715) | ER | |||
| 525373.HMPREF0766_14185 | (PF07715) | ER | |||
| 525373.HMPREF0766_14189 | (PF07715) | ER | |||
| 525373.HMPREF0766_11590 | (PF07715) | (mitochondrial) | |||
| 525373.HMPREF0766_11758 | (PF07715) | ER | |||
| 525373.HMPREF0766_11756 | (PF07715) | ER | |||
| 525373.HMPREF0766_13629 | (PF07715) | (mitochondrial) | |||
| 525373.HMPREF0766_12261 | (PF07715) | ER | |||
| 525373.HMPREF0766_12005 | (PF13650) | ER | |||
| 525373.HMPREF0766_13840 | (PF07971) | ER | |||
| 525373.HMPREF0766_14084 | (PF07715) | ER | |||
| 525373.HMPREF0766_10520 | (PF07715) | (mitochondrial); plastid | |||
| 525373.HMPREF0766_14230 | (PF07715) | ER | |||
| 525373.HMPREF0766_13500 | (PF07715) | ER | |||
| 525373.HMPREF0766_12674 | (PF07715) | ER | |||
| 525373.HMPREF0766_13476 | (PF07715) | (mitochondrial) | |||
| 525373.HMPREF0766_12273 | (PF07470) | ER | |||
| 525373.HMPREF0766_12274 | (PF12708) | ER | |||
| 525373.HMPREF0766_13878 | PF13402 | ER | |||
| 525373.HMPREF0766_12703 | (PF07715) | ER | |||
| 525373.HMPREF0766_14181 | (PF07715) | ER | |||
| 525373.HMPREF0766_10391 | (PF07715) | ER | |||
| 525373.HMPREF0766_10462 | (PF07470) | ER | |||
| 525373.HMPREF0766_10467 | (PF07715) | ER | |||
| 525373.HMPREF0766_10464 | (PF07470) | ER | |||
| 525373.HMPREF0766_10266 | (PF07971) | ER | |||
| 525373.HMPREF0766_13047 | (PF07715) | (ER) | |||
| 525373.HMPREF0766_10277 | (PF07715) | plastid | |||
| 525373.HMPREF0766_13018 | (PF07715) | (mitochondrial) | |||
| 525373.HMPREF0766_10105 | (PF00728) (PF02838) | ||||
| 525373.HMPREF0766_12611 | (PF07715) | plastid | |||
| 525373.HMPREF0766_12161 | (PF06439) | (ER) | |||
| 525373.HMPREF0766_13416 | (PF07715) | (mitochondrial) | |||
| 525373.HMPREF0766_11317 | (PF00728) (PF02838) | ||||
| 525373.HMPREF0766_11708 | (PF11958) | ||||
| 525373.HMPREF0766_11694 | (PF07715) | ||||
| 525373.HMPREF0766_13677 | (PF02469) | ||||
| 525373.HMPREF0766_12656 | (PF07715) | ||||
| 525373.HMPREF0766_12729 | (PF07715) | ||||
| 525373.HMPREF0766_10779 | (PF13376) | ||||
| 525373.HMPREF0766_14378 | (PF01715) | ||||
| 525373.HMPREF0766_13391 | (PF07715) | ||||
| 525373.HMPREF0766_10871 | (PF07715) | ||||
| 525373.HMPREF0766_14361 | (PF07715) | ||||
| 525373.HMPREF0766_13659 | (PF07715) | ||||
| 525373.HMPREF0766_13017 | (PF07715) | ||||
| 525373.HMPREF0766_11507 | (PF13376) | ||||
| 525373.HMPREF0766_14100 | (PF02182) | ||||
| 525373.HMPREF0766_11466 | (PF07715) | ||||
| 525373.HMPREF0766_12817 | (PF13650) | ||||
| 525373.HMPREF0766_13002 | (PF07715) | ||||
| 525373.HMPREF0766_12355 | (PF02689) | ||||
| 525373.HMPREF0766_12179 | (PF16314) | ||||
| 525373.HMPREF0766_13913 | (PF07715) | ||||
| 525373.HMPREF0766_10855 | (PF13376) | ||||
| 525373.HMPREF0766_14002 | (PF16011) | ||||
| 525373.HMPREF0766_12343 | (PF07653) | ||||
| 525373.HMPREF0766_11066 | (PF15588) | ||||
| 525373.HMPREF0766_10620 | (PF02469) | ||||
| 525373.HMPREF0766_11332 | (PF07715) | ||||
| 525373.HMPREF0766_10009 | (PF01120) | ||||
| 525373.HMPREF0766_11949 | (PF12721) | not used | |||
| 525373.HMPREF0766_10308 | (PF07715) | ||||
| 525373.HMPREF0766_14316 | (PF07971) | ||||
| 525373.HMPREF0766_14312 | (PF13376) | ||||
| 525373.HMPREF0766_12223 | (PF00454) | ||||
| 525373.HMPREF0766_12319 | (PF13906) | ||||
| 525373.HMPREF0766_11035 | (PF05192) | ||||
| 525373.HMPREF0766_12721 | (PF00388) | ||||
| 525373.HMPREF0766_13200 | (PF07715) | ||||
| 525373.HMPREF0766_11157 | (PF07715) | ||||
| 525373.HMPREF0766_11489 | (PF07715) | ||||
| 525373.HMPREF0766_10228 | (PF05192) | ||||
| 525373.HMPREF0766_13159 | (PF07715) | ||||
| 525373.HMPREF0766_14428 | (PF13376) | ||||
| 525373.HMPREF0766_12062 | (PF13905) | ||||
| 525373.HMPREF0766_14198 | (PF02469) | ||||
| 525373.HMPREF0766_13454 | (PF05192) | ||||
| 525373.HMPREF0766_11174 | (PF07470) | ||||
| 525373.HMPREF0766_12711 | (PF07715) | ||||
| 525373.HMPREF0766_10529 | (PF07715) | ||||
| 525373.HMPREF0766_11114 | (PF01715) | ||||
| 525373.HMPREF0766_12495 | (PF15610) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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