Effective results for Prevotella bivia JCVIHMP010 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 38 proteins (4 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
553171.HMPREF0648_0386				(PF05693)	(ER)
553171.HMPREF0648_0206				(PF03092)	ER
553171.HMPREF0648_1082				PF12812	ER; (ER)
553171.HMPREF0648_0565				(PF01715)	mitochondrial; (mitochondrial)
553171.HMPREF0648_0949				(PF03432)	mitochondrial; (mitochondrial)
553171.HMPREF0648_2020				(PF03051)	ER
553171.HMPREF0648_1061				(PF03051)	ER
553171.HMPREF0648_1853				(PF03051)	ER
553171.HMPREF0648_1261				(PF03051)	ER
553171.HMPREF0648_0789				PF13859	ER
553171.HMPREF0648_1399				(PF03432)	(plastid)
553171.HMPREF0648_0349				(PF02971) (PF07837)
553171.HMPREF0648_1524				(PF05970) (PF02689)
553171.HMPREF0648_1391				(PF13155)
553171.HMPREF0648_0492				(PF03432)
553171.HMPREF0648_0667				(PF13481)
553171.HMPREF0648_0934				(PF03415)
553171.HMPREF0648_1526				(PF01715)
553171.HMPREF0648_1603				(PF03432)
553171.HMPREF0648_1149				(PF13155)
553171.HMPREF0648_1595				(PF13481)
553171.HMPREF0648_1771				(PF03630)
553171.HMPREF0648_1189				(PF13481)
553171.HMPREF0648_0753				(PF16314)
553171.HMPREF0648_0598				(PF05970)
553171.HMPREF0648_1579				(PF13481)
553171.HMPREF0648_0685				(PF14771)
553171.HMPREF0648_1400				PF00435
553171.HMPREF0648_0786				(PF16011)
553171.HMPREF0648_1367				(PF13481)
553171.HMPREF0648_0952				(PF13481)
553171.HMPREF0648_0951				(PF13155)
553171.HMPREF0648_1841				PF16269
553171.HMPREF0648_0525				(PF01348)	not used
553171.HMPREF0648_1217				(PF13155)
553171.HMPREF0648_1215				(PF03432)
553171.HMPREF0648_2100				(PF03415)
553171.HMPREF0648_1003				(PF01348)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================