Metamenu

Effective results for Prevotella oris C735 (eggnog40)

Summary

Number of putative secreted proteins: 57
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 57 proteins (11 high, 46 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
563008.HMPREF0665_01961(PF16334) (PF16335) (PF17168) (PF08760)ER
563008.HMPREF0665_01488(PF01807) PF13155 (PF08275)
563008.HMPREF0665_02418(PF01807) PF13155 (PF08275)
563008.HMPREF0665_02355(PF01807) PF13155 (PF08275)
563008.HMPREF0665_00471(PF16401)(ER)
563008.HMPREF0665_01300(PF03432)mitochondrial; (mitochondrial)
563008.HMPREF0665_00097(PF16401)(ER)
563008.HMPREF0665_02063(PF00328)ER
563008.HMPREF0665_01676(PF00328)(ER)
563008.HMPREF0665_01339(PF08843)ER
563008.HMPREF0665_02308(PF05693)ER
563008.HMPREF0665_01654(PF05686)mitochondrial
563008.HMPREF0665_01435(PF03432)(mitochondrial)
563008.HMPREF0665_02187(PF14587)(ER)
563008.HMPREF0665_02188(PF14587)ER
563008.HMPREF0665_01989(PF03051)ER
563008.HMPREF0665_02223(PF08843)ER
563008.HMPREF0665_00632(PF14771)ER
563008.HMPREF0665_00611(PF04991)(mitochondrial)
563008.HMPREF0665_02567PF13155 (PF13481)
563008.HMPREF0665_01675(PF04383)(mitochondrial)
563008.HMPREF0665_01437(PF01807) PF13155
563008.HMPREF0665_00152(PF05970) (PF02689)
563008.HMPREF0665_01498PF16269
563008.HMPREF0665_01120PF03414
563008.HMPREF0665_01245PF13155
563008.HMPREF0665_00426(PF03432)
563008.HMPREF0665_02299(PF03051)
563008.HMPREF0665_02293(PF13481)
563008.HMPREF0665_02564(PF08843)
563008.HMPREF0665_02585(PF08843)
563008.HMPREF0665_02636(PF03432)
563008.HMPREF0665_01217(PF01624)
563008.HMPREF0665_01219(PF01624)
563008.HMPREF0665_00887(PF08843)
563008.HMPREF0665_00501(PF03630)
563008.HMPREF0665_01845(PF04383)
563008.HMPREF0665_01465(PF03051)
563008.HMPREF0665_02622(PF03432)
563008.HMPREF0665_00935(PF03432)
563008.HMPREF0665_01330(PF03432)
563008.HMPREF0665_01655(PF04991)
563008.HMPREF0665_01342(PF13481)
563008.HMPREF0665_02018(PF04991)
563008.HMPREF0665_01985(PF03432)
563008.HMPREF0665_01982PF13155
563008.HMPREF0665_00906(PF01624)
563008.HMPREF0665_00903PF13155
563008.HMPREF0665_00764(PF03432)
563008.HMPREF0665_00761PF13155
563008.HMPREF0665_02226(PF13481)
563008.HMPREF0665_00578(PF01715)
563008.HMPREF0665_00970(PF16314)
563008.HMPREF0665_00154(PF01715)
563008.HMPREF0665_01145(PF05970)
563008.HMPREF0665_01383(PF16011)
563008.HMPREF0665_01556(PF13481)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================