Metamenu

Effective results for Coraliomargarita akajimensis DSM 45221 (eggnog40)

Summary

Number of putative secreted proteins: 140
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 140 proteins (25 high, 115 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
583355.Caka_0644(PF11721) (PF06283) (PF03422)ER
583355.Caka_2937(PF06439) (PF06283)(ER)
583355.Caka_0789(PF01120) PF16757ER
583355.Caka_0530(PF01120) PF16757ER
583355.Caka_1715(PF02931) PF02932ER
583355.Caka_0634(PF03422) PF00722ER
583355.Caka_0793(PF00884)ER
583355.Caka_0483(PF00884)ER
583355.Caka_0641(PF06439)ER
583355.Caka_3117(PF03422)(ER)
583355.Caka_2799PF12371ER
583355.Caka_1838(PF13905)ER
583355.Caka_2935(PF06439)ER
583355.Caka_2686(PF00884)(ER); ER
583355.Caka_0120(PF03422)ER
583355.Caka_0785(PF13905)ER
583355.Caka_0490PF00722ER
583355.Caka_0645(PF06439)ER
583355.Caka_2789(PF06283)ER
583355.Caka_1008PF00722ER
583355.Caka_0468(PF09822)ER
583355.Caka_0460PF12904ER
583355.Caka_0461(PF00884)ER
583355.Caka_0462(PF00884)ER
583355.Caka_0464(PF00884)ER
583355.Caka_0689PF12904ER
583355.Caka_0200(PF06439)ER
583355.Caka_1253(PF03422)ER
583355.Caka_0071PF00722ER
583355.Caka_0078(PF11721)ER
583355.Caka_0478(PF00884)ER
583355.Caka_0473(PF06439)ER
583355.Caka_0477(PF00884)ER
583355.Caka_0505(PF00884)ER
583355.Caka_0232(PF00884)ER
583355.Caka_2126(PF14099)ER
583355.Caka_0199(PF06439)ER
583355.Caka_0449(PF15892)ER
583355.Caka_0442PF00722ER
583355.Caka_0228PF00722ER
583355.Caka_0537(PF01120)(ER); (mitochondrial)
583355.Caka_0532(PF00884)ER
583355.Caka_0059PF00722ER
583355.Caka_0057PF00722ER
583355.Caka_0234(PF00884)ER
583355.Caka_0231(PF00884)ER
583355.Caka_0989PF00722ER
583355.Caka_0521(PF00884)ER
583355.Caka_0523(PF01120)ER
583355.Caka_0522(PF01120)(mitochondrial); (plastid)
583355.Caka_0606(PF00884)ER
583355.Caka_1040(PF00884)ER
583355.Caka_0501(PF00884)ER; (ER)
583355.Caka_0500(PF00884)ER
583355.Caka_0506(PF01120)ER
583355.Caka_0424(PF00884)(mitochondrial)
583355.Caka_0425(PF00884)ER
583355.Caka_0426(PF00884)ER
583355.Caka_0427(PF00884)ER
583355.Caka_0422(PF00884)ER
583355.Caka_0429(PF00884)ER
583355.Caka_0088(PF06439)ER
583355.Caka_0954(PF06283)ER
583355.Caka_0553PF00722ER
583355.Caka_2772(PF00884)ER
583355.Caka_2179(PF00884)ER
583355.Caka_0492PF12904ER
583355.Caka_0433PF00722ER
583355.Caka_0430(PF00884)ER
583355.Caka_0090(PF06439)(ER)
583355.Caka_0547(PF06439)ER
583355.Caka_0972(PF06439)ER
583355.Caka_0978(PF03422)ER
583355.Caka_0373(PF00884)ER
583355.Caka_0374(PF00884)(ER)
583355.Caka_0377(PF00884)ER; (ER)
583355.Caka_0378(PF00884)ER
583355.Caka_0379PF00722ER
583355.Caka_1895(PF06283)ER
583355.Caka_1364(PF13905)ER
583355.Caka_0706(PF06283)ER
583355.Caka_0961(PF06283)ER
583355.Caka_0367(PF00884)mitochondrial
583355.Caka_0600(PF00884)ER
583355.Caka_0602(PF00884)ER
583355.Caka_0604(PF00884)ER
583355.Caka_2195(PF00884)ER
583355.Caka_2464(PF13905)mitochondrial
583355.Caka_0900(PF15892)ER
583355.Caka_3120PF00722ER; (ER)
583355.Caka_3123(PF06439)(ER)
583355.Caka_2616(PF05990)(mitochondrial)
583355.Caka_2188(PF00884)ER
583355.Caka_0629(PF09822)ER
583355.Caka_0626(PF00884)ER
583355.Caka_0625(PF00884)ER
583355.Caka_1507(PF06283)ER
583355.Caka_0038(PF00884)ER
583355.Caka_0639(PF06439)(ER)
583355.Caka_0813(PF15892)ER
583355.Caka_0258(PF00884)ER
583355.Caka_1021(PF14099)mitochondrial
583355.Caka_0135(PF03422)ER
583355.Caka_2927(PF06439)(ER)
583355.Caka_1003(PF08392)(mitochondrial)
583355.Caka_0074(PF01120) PF16757
583355.Caka_0536(PF01120)(plastid)
583355.Caka_0507(PF01120) PF16757
583355.Caka_0504(PF00884)(mitochondrial)
583355.Caka_0974(PF01120) PF16757
583355.Caka_0145(PF13507)(mitochondrial); not used
583355.Caka_0605(PF00884)(ER)
583355.Caka_3127(PF00884)(plastid)
583355.Caka_0119(PF03422)(mitochondrial)
583355.Caka_0480(PF01120)
583355.Caka_1232(PF14237)
583355.Caka_0787(PF13366)
583355.Caka_1222(PF14237)
583355.Caka_1652(PF13366)
583355.Caka_0666(PF14237)
583355.Caka_1814(PF01704)
583355.Caka_0696(PF13366)
583355.Caka_2124(PF13366)
583355.Caka_0229(PF00884)
583355.Caka_1908(PF01704)
583355.Caka_0054PF00722
583355.Caka_0502(PF00884)
583355.Caka_0428(PF06439)
583355.Caka_2713(PF05990)
583355.Caka_0148(PF13507)
583355.Caka_1176(PF12640)
583355.Caka_2864(PF13875)
583355.Caka_3124(PF00884)
583355.Caka_1199(PF13366)
583355.Caka_2319(PF09822)
583355.Caka_1031(PF05990)
583355.Caka_1039(PF00884)
583355.Caka_0033(PF00884)
583355.Caka_2274PF08213not used
583355.Caka_0137(PF15892)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================