Metamenu

Effective results for Lachnospiraceae bacterium 1_4_56FAA (eggnog40)

Summary

Number of putative secreted proteins: 138
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 35 eukaryotic-like domains, contained in 138 proteins (26 high, 112 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
658655.HMPREF0988_02806(PF05592) (PF08531)mitochondrial
658655.HMPREF0988_00371PF13347ER
658655.HMPREF0988_02930(PF06541)ER
658655.HMPREF0988_02908(PF05738)ER
658655.HMPREF0988_02875(PF01554)ER
658655.HMPREF0988_02874(PF01554)ER
658655.HMPREF0988_01240(PF00933) (PF14310) (PF01915)
658655.HMPREF0988_02114(PF01554)ER
658655.HMPREF0988_01817(PF05738)ER
658655.HMPREF0988_00807(PF00933) (PF14310) (PF01915)
658655.HMPREF0988_02792PF13347(ER)
658655.HMPREF0988_02795(PF00933) (PF14310) (PF01915)
658655.HMPREF0988_02796(PF00933) (PF14310) (PF01915)
658655.HMPREF0988_02246(PF11070)ER
658655.HMPREF0988_00798PF13347ER
658655.HMPREF0988_00249(PF06541)ER
658655.HMPREF0988_01303PF13347ER
658655.HMPREF0988_00494(PF01554)ER; (ER)
658655.HMPREF0988_03106(PF05738)ER
658655.HMPREF0988_02786PF13347ER
658655.HMPREF0988_01716(PF06541)ER
658655.HMPREF0988_01405(PF01554)(ER)
658655.HMPREF0988_02198(PF00933) (PF14310) (PF01915)
658655.HMPREF0988_00721(PF01554)ER
658655.HMPREF0988_01891(PF00933) (PF14310) (PF01915)
658655.HMPREF0988_02975(PF05738)ER
658655.HMPREF0988_02772(PF00933) (PF14310) (PF01915)
658655.HMPREF0988_03040(PF00933) (PF14310) (PF01915)
658655.HMPREF0988_00384(PF00933) (PF14310) (PF01915)
658655.HMPREF0988_02233(PF01554)ER
658655.HMPREF0988_02489(PF01554)ER; (ER)
658655.HMPREF0988_02225(PF00933) (PF14310) (PF01915)
658655.HMPREF0988_00369(PF05592) (PF08531)(mitochondrial)
658655.HMPREF0988_02721(PF05738)ER
658655.HMPREF0988_01634(PF01554)(ER)
658655.HMPREF0988_02106(PF01131)(mitochondrial)
658655.HMPREF0988_01480(PF16886)(mitochondrial)
658655.HMPREF0988_01932(PF01131)(plastid)
658655.HMPREF0988_01250(PF14310) (PF01915)
658655.HMPREF0988_01869(PF04422) (PF04432)
658655.HMPREF0988_01873(PF04422) (PF04432)
658655.HMPREF0988_00479(PF01554)(ER)
658655.HMPREF0988_00077PF13347(ER)
658655.HMPREF0988_02964(PF01131)(plastid)
658655.HMPREF0988_02763(PF05592) (PF08531)
658655.HMPREF0988_02771(PF05592) (PF08531)
658655.HMPREF0988_02155(PF01554)(ER)
658655.HMPREF0988_00385(PF05592) (PF08531)
658655.HMPREF0988_00381(PF05592) (PF08531)
658655.HMPREF0988_01288(PF00933) (PF01915)
658655.HMPREF0988_00374(PF13204)
658655.HMPREF0988_01419(PF00933)
658655.HMPREF0988_01148(PF01131)
658655.HMPREF0988_01120(PF03266)
658655.HMPREF0988_02695(PF12437)
658655.HMPREF0988_02304(PF00625)
658655.HMPREF0988_01906(PF02127)
658655.HMPREF0988_01907(PF02127)
658655.HMPREF0988_00237(PF02787)
658655.HMPREF0988_02877(PF01131)
658655.HMPREF0988_02871(PF00625)
658655.HMPREF0988_02910(PF12224)
658655.HMPREF0988_01249(PF00933)
658655.HMPREF0988_01485(PF01496)
658655.HMPREF0988_01481(PF01990)
658655.HMPREF0988_01483(PF01991)
658655.HMPREF0988_01482(PF01992)
658655.HMPREF0988_02686(PF02787)
658655.HMPREF0988_02687(PF02787)
658655.HMPREF0988_00681(PF12437)
658655.HMPREF0988_03137(PF01131)
658655.HMPREF0988_01499PF13347
658655.HMPREF0988_02254(PF01554)
658655.HMPREF0988_01268PF13347
658655.HMPREF0988_02667(PF01554)
658655.HMPREF0988_02406(PF01131)
658655.HMPREF0988_02242PF13347
658655.HMPREF0988_02240(PF17132)
658655.HMPREF0988_02241(PF17132)
658655.HMPREF0988_00623(PF00872)
658655.HMPREF0988_00018(PF01554)
658655.HMPREF0988_00624(PF00872)
658655.HMPREF0988_01456PF13347
658655.HMPREF0988_01455(PF03662)
658655.HMPREF0988_01872(PF04432)
658655.HMPREF0988_01197(PF13204)
658655.HMPREF0988_01208PF13347
658655.HMPREF0988_02519(PF00872)not used
658655.HMPREF0988_01478(PF01813)
658655.HMPREF0988_03174(PF00872)
658655.HMPREF0988_01990PF13347
658655.HMPREF0988_00075PF01229
658655.HMPREF0988_01189(PF12646)
658655.HMPREF0988_01210PF01229
658655.HMPREF0988_00855(PF01554)
658655.HMPREF0988_00854(PF00958)
658655.HMPREF0988_00674PF13347
658655.HMPREF0988_01859(PF06176)
658655.HMPREF0988_01404(PF02127)
658655.HMPREF0988_01407(PF01554)
658655.HMPREF0988_01153(PF02844)
658655.HMPREF0988_02197PF13347
658655.HMPREF0988_03020(PF00872)not used
658655.HMPREF0988_00440(PF00872)not used
658655.HMPREF0988_01152(PF02844)
658655.HMPREF0988_01238PF01229
658655.HMPREF0988_01239PF13347
658655.HMPREF0988_01237PF01229
658655.HMPREF0988_02962(PF00872)
658655.HMPREF0988_02768PF13347
658655.HMPREF0988_02765(PF00933)
658655.HMPREF0988_02149(PF01554)
658655.HMPREF0988_02148PF01229
658655.HMPREF0988_00439(PF00872)
658655.HMPREF0988_00954(PF17132)
658655.HMPREF0988_02773(PF00872)
658655.HMPREF0988_00600(PF00625)
658655.HMPREF0988_00550(PF12224)
658655.HMPREF0988_00387(PF01554)
658655.HMPREF0988_00380(PF05592)
658655.HMPREF0988_00383PF13347
658655.HMPREF0988_02237PF01229
658655.HMPREF0988_02236PF13347
658655.HMPREF0988_03055(PF00958)
658655.HMPREF0988_01579(PF01990)
658655.HMPREF0988_01575(PF01813)
658655.HMPREF0988_01577(PF16886)
658655.HMPREF0988_02710PF13347
658655.HMPREF0988_01026(PF01554)
658655.HMPREF0988_03190(PF00872)
658655.HMPREF0988_01369PF13347
658655.HMPREF0988_01581(PF01496)
658655.HMPREF0988_01582(PF01992)
658655.HMPREF0988_02583(PF02732)
658655.HMPREF0988_02107(PF01131)
658655.HMPREF0988_01968(PF00872)
658655.HMPREF0988_01969(PF00872)not used
658655.HMPREF0988_03183(PF00872)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================