Metamenu

Effective results for Synechococcus sp. WH 5701 (eggnog40)

Summary

Number of putative secreted proteins: 242
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 133 eukaryotic-like domains, contained in 242 proteins (70 high, 172 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
69042.WH5701_07859(PF16639) (PF01333)ER
69042.WH5701_01150(PF01716)ER
69042.WH5701_02629(PF16166)ER
69042.WH5701_10530(PF05116)mitochondrial
69042.WH5701_15696(PF07444)ER; (ER)
69042.WH5701_12009(PF13326)mitochondrial; plastid
69042.WH5701_02529(PF04784)ER
69042.WH5701_07869(PF11267)mitochondrial
69042.WH5701_11879(PF04278)mitochondrial; ER
69042.WH5701_15216(PF11805)ER
69042.WH5701_10609(PF13759)(ER)
69042.WH5701_03059(PF04481)mitochondrial
69042.WH5701_08889(PF01789)ER
69042.WH5701_11719(PF10716)ER
69042.WH5701_11714(PF11460)ER
69042.WH5701_05195(PF02696)ER; (ER)
69042.WH5701_05680(PF11909)(mitochondrial)
69042.WH5701_14391PF02005mitochondrial
69042.WH5701_10879(PF06863)ER
69042.WH5701_13280(PF12159)ER; (ER)
69042.WH5701_11029(PF11965)(ER); ER
69042.WH5701_03099(PF01737)ER
69042.WH5701_13275(PF10693)(ER)
69042.WH5701_12898(PF03040)mitochondrial; (mitochondrial)
69042.WH5701_05495(PF00796)ER
69042.WH5701_11614PF01744ER
69042.WH5701_09855PF13911(ER)
69042.WH5701_07894(PF02507)ER
69042.WH5701_05825(PF12046)ER
69042.WH5701_04570(PF04087)(ER)
69042.WH5701_10764(PF12766)mitochondrial
69042.WH5701_09054(PF06863)(ER); (plastid)
69042.WH5701_01425(PF00737)(mitochondrial)
69042.WH5701_03344(PF00140)(mitochondrial); (plastid)
69042.WH5701_10919PF01744(ER)
69042.WH5701_01860(PF06863)ER; (ER)
69042.WH5701_01280(PF07444)ER
69042.WH5701_00550(PF06514)ER
69042.WH5701_03995(PF01078)mitochondrial; (plastid)
69042.WH5701_01855(PF06863)ER
69042.WH5701_09395(PF01169)ER
69042.WH5701_09880PF05598 (PF01609)
69042.WH5701_10415PF05598 (PF01609)
69042.WH5701_03950(PF00284) (PF00283)
69042.WH5701_10894PF05598 (PF01609)
69042.WH5701_01430(PF02468)ER; not used
69042.WH5701_08564PF05598 (PF01609)
69042.WH5701_09039(PF06298)ER; not used
69042.WH5701_01095(PF05168)(mitochondrial)
69042.WH5701_15691(PF06596)ER; not used
69042.WH5701_10959PF05598 (PF01609)
69042.WH5701_08829(PF07082)(plastid)
69042.WH5701_15596PF05598 (PF01609)
69042.WH5701_04295(PF05168)mitochondrial; not used
69042.WH5701_09695PF05598 (PF01609)
69042.WH5701_13350(PF11264)(plastid)
69042.WH5701_10440(PF05023)(mitochondrial)
69042.WH5701_07566PF05598 (PF01609)
69042.WH5701_08324(PF05168)(plastid)
69042.WH5701_14166PF05598 (PF01609)
69042.WH5701_10285(PF00140)(plastid)
69042.WH5701_09334PF05598 (PF01609)
69042.WH5701_02304PF05598 (PF01609)
69042.WH5701_06951PF05598 (PF01609)
69042.WH5701_10874(PF06863)plastid
69042.WH5701_06891PF05598 (PF01609)
69042.WH5701_08584PF05598 (PF01609)
69042.WH5701_07096PF05598 (PF01609)
69042.WH5701_00840(PF10664)(mitochondrial)
69042.WH5701_12408PF05598 (PF01609)
69042.WH5701_15726(PF01078)(mitochondrial)
69042.WH5701_06856PF05598 (PF01609)
69042.WH5701_05310PF05598 (PF01609)
69042.WH5701_07091PF05598 (PF01609)
69042.WH5701_03539PF05598 (PF01609)
69042.WH5701_06866PF05598 (PF01609)
69042.WH5701_12059(PF00140)(plastid)
69042.WH5701_01865PF05598 (PF01609)
69042.WH5701_03359(PF04488)(ER)
69042.WH5701_03945(PF00283)(ER); not used
69042.WH5701_07066PF05598 (PF01609)
69042.WH5701_01445(PF12600)(plastid)
69042.WH5701_14461(PF00140)
69042.WH5701_08574PF05598
69042.WH5701_14261(PF05168)
69042.WH5701_05620(PF17136)
69042.WH5701_05625PF00238
69042.WH5701_14866(PF08855)
69042.WH5701_00395PF12452
69042.WH5701_04095(PF02696)
69042.WH5701_16290(PF11965)
69042.WH5701_16490(PF05996)not used
69042.WH5701_11214(PF04784)
69042.WH5701_07471(PF01609)
69042.WH5701_09364(PF11210)
69042.WH5701_06010(PF05151)not used
69042.WH5701_14416(PF00124)
69042.WH5701_14411(PF02392)
69042.WH5701_04410(PF04087)
69042.WH5701_08039(PF02529)not used
69042.WH5701_14636(PF12204)
69042.WH5701_15231(PF13759)
69042.WH5701_00415(PF08670)
69042.WH5701_08634PF05598
69042.WH5701_11044(PF12766)
69042.WH5701_16470PF11947
69042.WH5701_15901PF05598
69042.WH5701_07466PF05598
69042.WH5701_13365PF03742not used
69042.WH5701_01550(PF02533)not used
69042.WH5701_12913(PF11152)
69042.WH5701_14751PF00504not used
69042.WH5701_10619(PF08417)
69042.WH5701_16475PF00312not used
69042.WH5701_16273PF11998
69042.WH5701_03935(PF01788)
69042.WH5701_13185(PF11360)
69042.WH5701_09525(PF03652)
69042.WH5701_08129(PF01169)
69042.WH5701_08014(PF01078)
69042.WH5701_01180(PF04483)
69042.WH5701_08904(PF08857)
69042.WH5701_00615(PF12095)
69042.WH5701_03129PF05598
69042.WH5701_04825(PF05116)
69042.WH5701_04820(PF05116)
69042.WH5701_16605(PF16983)
69042.WH5701_04635(PF01725)
69042.WH5701_10949PF05598
69042.WH5701_04620(PF14707)
69042.WH5701_08069(PF14159)
69042.WH5701_09825PF00504
69042.WH5701_05475(PF00223)
69042.WH5701_08669(PF04087)
69042.WH5701_15176(PF04839)
69042.WH5701_15556(PF10063)
69042.WH5701_05070(PF16320)
69042.WH5701_14561(PF01409)
69042.WH5701_08254PF11833
69042.WH5701_05710(PF10999)
69042.WH5701_14386(PF08041)not used
69042.WH5701_11399(PF08847)
69042.WH5701_05995(PF01405)not used
69042.WH5701_15381(PF11341)
69042.WH5701_11629(PF00140)
69042.WH5701_10719(PF00124)
69042.WH5701_00325(PF16320)
69042.WH5701_00630(PF05421)
69042.WH5701_02070(PF01947)
69042.WH5701_05190(PF02696)not used
69042.WH5701_01510(PF09366)
69042.WH5701_05685(PF12617)
69042.WH5701_13090(PF09353)
69042.WH5701_15711PF00504
69042.WH5701_09219(PF13281)
69042.WH5701_08444PF00312
69042.WH5701_08449PF11947
69042.WH5701_10724(PF10013)not used
69042.WH5701_15441(PF04983)
69042.WH5701_15446(PF04983)
69042.WH5701_10125(PF06799)
69042.WH5701_16435(PF06421)not used
69042.WH5701_16545PF13911
69042.WH5701_12388(PF04488)
69042.WH5701_12653(PF00124)
69042.WH5701_16163(PF01409)not used
69042.WH5701_08304(PF06863)
69042.WH5701_07781PF11833
69042.WH5701_13265PF00504not used
69042.WH5701_06231(PF08853)
69042.WH5701_08699PF00504
69042.WH5701_05735(PF14159)
69042.WH5701_06176(PF02427)
69042.WH5701_00015(PF01725)
69042.WH5701_15526(PF00124)
69042.WH5701_11024(PF01078)
69042.WH5701_15851(PF02943)
69042.WH5701_11514(PF03982)
69042.WH5701_16555(PF17136)
69042.WH5701_16081(PF05116)
69042.WH5701_16086PF00504not used
69042.WH5701_04790PF05598
69042.WH5701_04770PF05598
69042.WH5701_15516PF11998
69042.WH5701_05490(PF02605)
69042.WH5701_11139PF00504
69042.WH5701_16565PF00366
69042.WH5701_16560PF00238
69042.WH5701_06846PF05598
69042.WH5701_00845(PF11371)
69042.WH5701_12074(PF08854)
69042.WH5701_03880(PF02938)
69042.WH5701_03885(PF00140)
69042.WH5701_05795(PF02531)
69042.WH5701_11194PF00504
69042.WH5701_05480(PF00223)
69042.WH5701_00695(PF11910)
69042.WH5701_03634(PF11623)not used
69042.WH5701_02239(PF14707)
69042.WH5701_13620(PF11347)
69042.WH5701_06130(PF12899)
69042.WH5701_01480(PF11378)
69042.WH5701_06596(PF06421)
69042.WH5701_01065(PF09366)
69042.WH5701_13905PF00018
69042.WH5701_07889(PF01701)not used
69042.WH5701_08714(PF03492)
69042.WH5701_06916PF00504
69042.WH5701_15086(PF02941)
69042.WH5701_10564(PF01725)
69042.WH5701_03249PF01762
69042.WH5701_13635(PF05996)
69042.WH5701_07181(PF11965)
69042.WH5701_08239(PF12049)
69042.WH5701_06276(PF11317)
69042.WH5701_01270(PF08857)
69042.WH5701_01900(PF08670)
69042.WH5701_09520(PF12527)
69042.WH5701_01120(PF00124)
69042.WH5701_14216(PF05168)
69042.WH5701_09945PF05598
69042.WH5701_10594PF16865
69042.WH5701_06906PF00504not used
69042.WH5701_11179PF00504not used
69042.WH5701_02214(PF14707)
69042.WH5701_09425(PF04483)
69042.WH5701_09550PF05598
69042.WH5701_08554PF05598
69042.WH5701_00730(PF00124)
69042.WH5701_12039(PF11016)
69042.WH5701_13495(PF11282)
69042.WH5701_02554(PF00140)
69042.WH5701_09410(PF05969)not used
69042.WH5701_14471(PF13355)
69042.WH5701_05630PF00366
69042.WH5701_16820(PF02938)not used
69042.WH5701_16315(PF03652)
69042.WH5701_03940PF02419not used
69042.WH5701_09570PF12452
69042.WH5701_08979(PF10674)
69042.WH5701_09400(PF01169)
69042.WH5701_01440(PF02532)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================