Effective results for Clostridium symbiosum WAL-14163 (eggnog40)
Summary
Number of putative secreted proteins: 278
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 59 eukaryotic-like domains, contained in 278 proteins (53 high, 225 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 742740.HMPREF9474_02731 | (PF02826) (PF00389) | (mitochondrial) | |||
| 742740.HMPREF9474_02116 | (PF01610) | (mitochondrial) | |||
| 742740.HMPREF9474_00330 | (PF00474) | ER | |||
| 742740.HMPREF9474_04366 | (PF07670) | (ER) | |||
| 742740.HMPREF9474_00191 | (PF12821) | (ER) | |||
| 742740.HMPREF9474_01481 | PF01554 | (ER) | |||
| 742740.HMPREF9474_03342 | (PF03553) | ER | |||
| 742740.HMPREF9474_04376 | (PF03553) | ER | |||
| 742740.HMPREF9474_00447 | (PF03553) | ER | |||
| 742740.HMPREF9474_02723 | (PF11070) | ER | |||
| 742740.HMPREF9474_02925 | (PF12821) | ER | |||
| 742740.HMPREF9474_03893 | (PF00474) | ER | |||
| 742740.HMPREF9474_03894 | (PF00474) | ER | |||
| 742740.HMPREF9474_00251 | (PF16889) | mitochondrial | |||
| 742740.HMPREF9474_00889 | PF01554 | ER | |||
| 742740.HMPREF9474_03264 | (PF14526) | mitochondrial | |||
| 742740.HMPREF9474_00395 | (PF00474) | ER | |||
| 742740.HMPREF9474_04058 | (PF02417) | ER | |||
| 742740.HMPREF9474_00817 | (PF01131) | (mitochondrial) | |||
| 742740.HMPREF9474_03290 | (PF02417) | ER | |||
| 742740.HMPREF9474_03291 | (PF02417) | ER | |||
| 742740.HMPREF9474_00878 | (PF00474) | ER | |||
| 742740.HMPREF9474_02408 | (PF02417) | ER | |||
| 742740.HMPREF9474_03820 | (PF02417) | ER | |||
| 742740.HMPREF9474_00243 | (PF16889) | mitochondrial | |||
| 742740.HMPREF9474_03136 | (PF00474) | ER | |||
| 742740.HMPREF9474_03908 | (PF01992) | mitochondrial | |||
| 742740.HMPREF9474_03906 | (PF00137) | ER | |||
| 742740.HMPREF9474_00235 | (PF03553) | ER | |||
| 742740.HMPREF9474_00821 | (PF00474) | ER | |||
| 742740.HMPREF9474_03334 | (PF12821) | ER | |||
| 742740.HMPREF9474_01888 | PF01554 | (ER) | |||
| 742740.HMPREF9474_02217 | (PF03553) | ER | |||
| 742740.HMPREF9474_02450 | (PF03553) | ER | |||
| 742740.HMPREF9474_04466 | (PF01610) | (mitochondrial); mitochondrial | |||
| 742740.HMPREF9474_00144 | PF01554 | ER; (ER) | |||
| 742740.HMPREF9474_00977 | (PF00474) | ER | |||
| 742740.HMPREF9474_03318 | PF01554 | ER | |||
| 742740.HMPREF9474_03316 | (PF00474) | ER | |||
| 742740.HMPREF9474_02166 | PF01554 | (ER) | |||
| 742740.HMPREF9474_03301 | PF01554 | ER | |||
| 742740.HMPREF9474_04246 | (PF03553) | ER | |||
| 742740.HMPREF9474_00307 | (PF03553) | ER | |||
| 742740.HMPREF9474_00304 | PF01554 | (ER) | |||
| 742740.HMPREF9474_00097 | (PF00474) | ER | |||
| 742740.HMPREF9474_01853 | PF01554 | ER; (ER) | |||
| 742740.HMPREF9474_02225 | PF01554 | (ER) | |||
| 742740.HMPREF9474_02820 | (PF00474) | ER | |||
| 742740.HMPREF9474_03379 | PF01554 | ER | |||
| 742740.HMPREF9474_04182 | (PF00474) | ER | |||
| 742740.HMPREF9474_04600 | (PF02417) | ER | |||
| 742740.HMPREF9474_04601 | (PF02417) | ER | |||
| 742740.HMPREF9474_04357 | (PF00474) | ER | |||
| 742740.HMPREF9474_00611 | (PF00137) | ER | |||
| 742740.HMPREF9474_00218 | (PF00137) | ER | |||
| 742740.HMPREF9474_02807 | PF01554 | (plastid) | |||
| 742740.HMPREF9474_03929 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_04560 | (PF07670) | (ER) | |||
| 742740.HMPREF9474_04384 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_00607 | (PF16886) | (mitochondrial) | |||
| 742740.HMPREF9474_00605 | (PF01813) | (mitochondrial) | |||
| 742740.HMPREF9474_02908 | (PF07687) (PF01546) | ||||
| 742740.HMPREF9474_04177 | PF01554 | (ER) | |||
| 742740.HMPREF9474_01948 | (PF07687) (PF01546) | ||||
| 742740.HMPREF9474_01944 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_03533 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_03393 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_02627 | (PF07687) (PF01546) | ||||
| 742740.HMPREF9474_00283 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_00284 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_00662 | (PF03437) | (mitochondrial) | |||
| 742740.HMPREF9474_01395 | (PF07687) (PF01546) | ||||
| 742740.HMPREF9474_03415 | PF07837 PF02971 | ||||
| 742740.HMPREF9474_02923 | (PF02421) (PF07670) | ||||
| 742740.HMPREF9474_03383 | (PF02550) (PF13336) | ||||
| 742740.HMPREF9474_02657 | (PF02550) (PF13336) | ||||
| 742740.HMPREF9474_03252 | (PF04432) (PF04422) | ||||
| 742740.HMPREF9474_00127 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_01014 | (PF02550) (PF13336) | ||||
| 742740.HMPREF9474_01525 | PF01554 | (ER) | |||
| 742740.HMPREF9474_00002 | (PF07670) | (plastid) | |||
| 742740.HMPREF9474_00131 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_04481 | (PF01131) | (plastid) | |||
| 742740.HMPREF9474_00924 | (PF04432) (PF04422) | ||||
| 742740.HMPREF9474_00871 | (PF02550) (PF13336) | ||||
| 742740.HMPREF9474_01725 | (PF04432) (PF04422) | ||||
| 742740.HMPREF9474_03597 | (PF07687) (PF01546) | ||||
| 742740.HMPREF9474_03821 | (PF02417) | (ER) | |||
| 742740.HMPREF9474_00113 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_03588 | (PF07687) (PF01546) | ||||
| 742740.HMPREF9474_03051 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_03058 | (PF05063) | (mitochondrial) | |||
| 742740.HMPREF9474_03903 | (PF16886) | (ER) | |||
| 742740.HMPREF9474_04112 | (PF02550) (PF13336) | ||||
| 742740.HMPREF9474_00231 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_00163 | (PF02421) (PF07670) | ||||
| 742740.HMPREF9474_00582 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_01560 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_03936 | PF02971 PF07837 | ||||
| 742740.HMPREF9474_01883 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_01886 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_01172 | PF01554 | (mitochondrial) | |||
| 742740.HMPREF9474_00682 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_03044 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_01947 | (PF07687) (PF01546) | ||||
| 742740.HMPREF9474_01541 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_02843 | PF07837 PF02971 | ||||
| 742740.HMPREF9474_03018 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_03940 | (PF07687) (PF01546) | ||||
| 742740.HMPREF9474_00303 | PF01554 | (ER) | |||
| 742740.HMPREF9474_01920 | (PF07687) (PF01546) | ||||
| 742740.HMPREF9474_01924 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_02799 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_03378 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_00884 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_00404 | (PF07687) (PF01546) | ||||
| 742740.HMPREF9474_01146 | (PF02421) (PF07670) | ||||
| 742740.HMPREF9474_02617 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_03747 | (PF07687) (PF01546) | ||||
| 742740.HMPREF9474_00327 | (PF02550) (PF13336) | ||||
| 742740.HMPREF9474_00321 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_00185 | (PF07687) (PF01546) | ||||
| 742740.HMPREF9474_00187 | (PF01546) (PF07687) | ||||
| 742740.HMPREF9474_00186 | (PF02826) (PF00389) | ||||
| 742740.HMPREF9474_02802 | (PF14512) | ||||
| 742740.HMPREF9474_02804 | (PF07687) | ||||
| 742740.HMPREF9474_04260 | (PF09359) | ||||
| 742740.HMPREF9474_02115 | (PF01610) | ||||
| 742740.HMPREF9474_03885 | (PF00474) | ||||
| 742740.HMPREF9474_03737 | (PF13474) | ||||
| 742740.HMPREF9474_03735 | (PF13597) | ||||
| 742740.HMPREF9474_04561 | (PF01175) | ||||
| 742740.HMPREF9474_04368 | (PF14526) | ||||
| 742740.HMPREF9474_04362 | (PF09861) | ||||
| 742740.HMPREF9474_00608 | (PF01990) | ||||
| 742740.HMPREF9474_00609 | (PF01992) | ||||
| 742740.HMPREF9474_01806 | (PF12646) | ||||
| 742740.HMPREF9474_01249 | PF01554 | ||||
| 742740.HMPREF9474_03346 | (PF02357) | ||||
| 742740.HMPREF9474_02631 | (PF09359) | ||||
| 742740.HMPREF9474_02630 | (PF13474) | ||||
| 742740.HMPREF9474_00679 | (PF01546) | ||||
| 742740.HMPREF9474_00703 | (PF00221) | ||||
| 742740.HMPREF9474_00700 | (PF00221) | ||||
| 742740.HMPREF9474_02135 | (PF14526) | ||||
| 742740.HMPREF9474_03086 | (PF12437) | ||||
| 742740.HMPREF9474_03081 | (PF02421) | ||||
| 742740.HMPREF9474_02623 | (PF03553) | ||||
| 742740.HMPREF9474_00843 | (PF01880) | ||||
| 742740.HMPREF9474_03881 | (PF13474) | ||||
| 742740.HMPREF9474_01625 | (PF09861) | ||||
| 742740.HMPREF9474_03416 | (PF04961) | ||||
| 742740.HMPREF9474_02659 | (PF00474) | ||||
| 742740.HMPREF9474_00274 | (PF07670) | ||||
| 742740.HMPREF9474_00384 | (PF01610) | ||||
| 742740.HMPREF9474_01013 | (PF14336) | ||||
| 742740.HMPREF9474_01382 | (PF01131) | ||||
| 742740.HMPREF9474_04229 | (PF03553) | ||||
| 742740.HMPREF9474_03460 | (PF07687) | ||||
| 742740.HMPREF9474_02420 | (PF01546) | ||||
| 742740.HMPREF9474_03066 | (PF01131) | ||||
| 742740.HMPREF9474_03841 | (PF13474) | ||||
| 742740.HMPREF9474_04059 | (PF02417) | ||||
| 742740.HMPREF9474_00136 | PF01989 | ||||
| 742740.HMPREF9474_00137 | PF04412 | ||||
| 742740.HMPREF9474_00138 | (PF09861) | ||||
| 742740.HMPREF9474_04612 | (PF13597) | ||||
| 742740.HMPREF9474_01355 | (PF13474) | ||||
| 742740.HMPREF9474_03550 | (PF01546) | ||||
| 742740.HMPREF9474_03279 | (PF01610) | ||||
| 742740.HMPREF9474_03274 | PF00958 | ||||
| 742740.HMPREF9474_00257 | (PF02357) | ||||
| 742740.HMPREF9474_03104 | PF00958 | ||||
| 742740.HMPREF9474_00100 | (PF16011) | ||||
| 742740.HMPREF9474_01033 | (PF02906) | ||||
| 742740.HMPREF9474_01030 | PF01554 | ||||
| 742740.HMPREF9474_01031 | (PF02906) | ||||
| 742740.HMPREF9474_00745 | (PF02906) | ||||
| 742740.HMPREF9474_01612 | (PF02906) | ||||
| 742740.HMPREF9474_01619 | (PF02906) | ||||
| 742740.HMPREF9474_01502 | (PF00221) | ||||
| 742740.HMPREF9474_02713 | (PF03630) | ||||
| 742740.HMPREF9474_02407 | (PF02417) | ||||
| 742740.HMPREF9474_04158 | PF05203 | ||||
| 742740.HMPREF9474_03595 | (PF03553) | ||||
| 742740.HMPREF9474_02662 | PF01554 | ||||
| 742740.HMPREF9474_04210 | PF04412 | ||||
| 742740.HMPREF9474_00939 | (PF02357) | ||||
| 742740.HMPREF9474_04677 | (PF01610) | ||||
| 742740.HMPREF9474_00027 | (PF01131) | ||||
| 742740.HMPREF9474_02189 | (PF03417) | ||||
| 742740.HMPREF9474_02476 | PF01554 | ||||
| 742740.HMPREF9474_00830 | PF01554 | ||||
| 742740.HMPREF9474_02129 | (PF12681) | ||||
| 742740.HMPREF9474_03583 | (PF01610) | ||||
| 742740.HMPREF9474_03905 | (PF01990) | ||||
| 742740.HMPREF9474_03907 | (PF01496) | ||||
| 742740.HMPREF9474_03901 | (PF01813) | ||||
| 742740.HMPREF9474_04689 | (PF01610) | ||||
| 742740.HMPREF9474_04683 | PF01989 | ||||
| 742740.HMPREF9474_03639 | (PF03313) | ||||
| 742740.HMPREF9474_04684 | PF04412 | ||||
| 742740.HMPREF9474_01987 | PF01554 | ||||
| 742740.HMPREF9474_04664 | PF01989 | ||||
| 742740.HMPREF9474_00161 | (PF07670) | ||||
| 742740.HMPREF9474_00586 | (PF03417) | ||||
| 742740.HMPREF9474_00580 | (PF03313) | ||||
| 742740.HMPREF9474_01745 | PF01554 | ||||
| 742740.HMPREF9474_03236 | (PF02357) | ||||
| 742740.HMPREF9474_03237 | (PF02357) | ||||
| 742740.HMPREF9474_03230 | (PF14526) | ||||
| 742740.HMPREF9474_01413 | (PF01487) | ||||
| 742740.HMPREF9474_02192 | (PF01795) | ||||
| 742740.HMPREF9474_00826 | (PF07670) | ||||
| 742740.HMPREF9474_02685 | (PF01610) | ||||
| 742740.HMPREF9474_03939 | (PF01175) | ||||
| 742740.HMPREF9474_03932 | (PF00221) | ||||
| 742740.HMPREF9474_03937 | (PF04961) | ||||
| 742740.HMPREF9474_04475 | (PF05063) | ||||
| 742740.HMPREF9474_04653 | PF12931 | ||||
| 742740.HMPREF9474_03801 | (PF01546) | ||||
| 742740.HMPREF9474_00223 | (PF03553) | ||||
| 742740.HMPREF9474_01088 | (PF14512) | ||||
| 742740.HMPREF9474_01223 | (PF12224) | ||||
| 742740.HMPREF9474_02216 | (PF02906) | ||||
| 742740.HMPREF9474_02528 | PF01554 | ||||
| 742740.HMPREF9474_02520 | (PF14512) | ||||
| 742740.HMPREF9474_03031 | (PF02826) | ||||
| 742740.HMPREF9474_03032 | (PF02826) | ||||
| 742740.HMPREF9474_03037 | PF01554 | ||||
| 742740.HMPREF9474_00964 | PF01554 | ||||
| 742740.HMPREF9474_01772 | (PF13474) | ||||
| 742740.HMPREF9474_03742 | (PF13597) | ||||
| 742740.HMPREF9474_02842 | (PF04961) | ||||
| 742740.HMPREF9474_02025 | PF01554 | ||||
| 742740.HMPREF9474_00975 | (PF01546) | ||||
| 742740.HMPREF9474_03319 | PF01554 | ||||
| 742740.HMPREF9474_03312 | PF01554 | ||||
| 742740.HMPREF9474_03955 | PF01554 | ||||
| 742740.HMPREF9474_03177 | (PF12224) | ||||
| 742740.HMPREF9474_04607 | (PF13474) | ||||
| 742740.HMPREF9474_00375 | PF01554 | ||||
| 742740.HMPREF9474_03781 | (PF01795) | ||||
| 742740.HMPREF9474_02781 | (PF03313) | ||||
| 742740.HMPREF9474_00940 | (PF02357) | ||||
| 742740.HMPREF9474_04405 | (PF01546) | ||||
| 742740.HMPREF9474_04248 | PF04412 | ||||
| 742740.HMPREF9474_03943 | PF01554 | ||||
| 742740.HMPREF9474_04247 | PF01989 | ||||
| 742740.HMPREF9474_00305 | (PF01610) | ||||
| 742740.HMPREF9474_00308 | (PF00221) | ||||
| 742740.HMPREF9474_00096 | (PF09861) | ||||
| 742740.HMPREF9474_01928 | (PF03437) | ||||
| 742740.HMPREF9474_01923 | (PF03313) | ||||
| 742740.HMPREF9474_01857 | (PF01131) | ||||
| 742740.HMPREF9474_01456 | (PF03553) | ||||
| 742740.HMPREF9474_03976 | (PF14526) | ||||
| 742740.HMPREF9474_03198 | PF00958 | ||||
| 742740.HMPREF9474_00402 | (PF07670) | ||||
| 742740.HMPREF9474_00403 | (PF07670) | ||||
| 742740.HMPREF9474_00310 | (PF01175) | ||||
| 742740.HMPREF9474_04349 | (PF01487) | ||||
| 742740.HMPREF9474_01598 | (PF01880) | ||||
| 742740.HMPREF9474_01860 | (PF01546) | ||||
| 742740.HMPREF9474_01869 | (PF12437) | ||||
| 742740.HMPREF9474_03408 | (PF03417) | ||||
| 742740.HMPREF9474_04198 | PF01554 | ||||
| 742740.HMPREF9474_04249 | PF04412 | ||||
| 742740.HMPREF9474_03188 | (PF12681) | ||||
| 742740.HMPREF9474_03981 | (PF03313) | ||||
| 742740.HMPREF9474_04356 | (PF02826) | ||||
| 742740.HMPREF9474_01052 | (PF01610) | ||||
| 742740.HMPREF9474_01123 | PF01554 | ||||
| 742740.HMPREF9474_00610 | (PF01991) | ||||
| 742740.HMPREF9474_00612 | (PF01496) | ||||
| 742740.HMPREF9474_01679 | (PF05063) | ||||
| 742740.HMPREF9474_02378 | PF01469 | not used | |||
| 742740.HMPREF9474_02379 | PF01469 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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