Effective results for Prevotella multiformis DSM 16608 (eggnog40)

Summary

Number of putative secreted proteins: 51
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 51 proteins (4 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
888743.HMPREF9141_0253				(PF03051)	ER
888743.HMPREF9141_0678				(PF13306)	ER
888743.HMPREF9141_2124				(PF13306)	ER
888743.HMPREF9141_2121				(PF13306)	ER
888743.HMPREF9141_1803				(PF05704)	(mitochondrial)
888743.HMPREF9141_0689				(PF03644)	ER
888743.HMPREF9141_1016				PF12812	(ER)
888743.HMPREF9141_2104				(PF12256)	ER
888743.HMPREF9141_1295				(PF13306)	ER
888743.HMPREF9141_2013				(PF16314)	(mitochondrial)
888743.HMPREF9141_1440				(PF13306)	ER
888743.HMPREF9141_2152				(PF03092)	ER
888743.HMPREF9141_1430				(PF13306)	ER
888743.HMPREF9141_1435				(PF13306)	ER
888743.HMPREF9141_2637				(PF13306)	(ER); ER
888743.HMPREF9141_1386				(PF13306)	ER
888743.HMPREF9141_0382				(PF13306)	ER
888743.HMPREF9141_0904				(PF03051)	ER
888743.HMPREF9141_0456				(PF13155) (PF01807)
888743.HMPREF9141_0420				(PF00145)	(ER)
888743.HMPREF9141_2802				(PF02971) (PF07837)
888743.HMPREF9141_2382				(PF13155) (PF01807)
888743.HMPREF9141_2723				(PF05970) (PF02689)
888743.HMPREF9141_1747				(PF13155) (PF01807)
888743.HMPREF9141_0658				(PF13155) (PF01807)
888743.HMPREF9141_1327				(PF00145)
888743.HMPREF9141_1328				(PF00145)
888743.HMPREF9141_0863				(PF13306)
888743.HMPREF9141_1872				(PF13151)
888743.HMPREF9141_2324				(PF00145)
888743.HMPREF9141_0572				(PF13306)
888743.HMPREF9141_1867				(PF04991)
888743.HMPREF9141_2592				(PF00145)
888743.HMPREF9141_1458				(PF05970)
888743.HMPREF9141_1857				(PF13151)
888743.HMPREF9141_2586				PF12873
888743.HMPREF9141_0533				(PF13155)
888743.HMPREF9141_1054				(PF01715)
888743.HMPREF9141_0094				(PF04991)
888743.HMPREF9141_2144				(PF03051)
888743.HMPREF9141_1134				(PF04991)
888743.HMPREF9141_1895				PF15636
888743.HMPREF9141_2725				(PF01715)
888743.HMPREF9141_0289				(PF05693)
888743.HMPREF9141_2440				(PF00145)
888743.HMPREF9141_2285				(PF00145)
888743.HMPREF9141_2283				(PF00145)
888743.HMPREF9141_2661				(PF16011)
888743.HMPREF9141_2524				(PF12256)	not used
888743.HMPREF9141_1990				(PF03630)
888743.HMPREF9141_0834				PF16269

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================