Metamenu

Effective results for Planctopirus limnophila DSM 3776 (eggnog40)

Summary

Number of putative secreted proteins: 182
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 42 eukaryotic-like domains, contained in 182 proteins (3 high, 179 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
521674.Plim_2371(PF00884) (PF14707)ER
521674.Plim_0789(PF00884) (PF14707)ER
521674.Plim_2941(PF13360) (PF13570)ER
521674.Plim_3151(PF13646) (PF03629)ER
521674.Plim_0250(PF13360) (PF13570)mitochondrial
521674.Plim_2738(PF00884) (PF14707)ER
521674.Plim_1880(PF14240) (PF03983)ER
521674.Plim_2356(PF06439)(ER)
521674.Plim_1520(PF00884)ER
521674.Plim_0034(PF09825)ER
521674.Plim_2507(PF13768)mitochondrial
521674.Plim_1666(PF06283)ER
521674.Plim_0627(PF06283) (PF06439)(ER)
521674.Plim_3030(PF01847)ER
521674.Plim_3108(PF13905)ER
521674.Plim_0038(PF06439)(ER)
521674.Plim_2341(PF13360)ER
521674.Plim_1536(PF13905)(mitochondrial)
521674.Plim_3363(PF13180)ER
521674.Plim_1848(PF13360)ER
521674.Plim_3683(PF00862)ER
521674.Plim_0632(PF00432)ER
521674.Plim_3206(PF00884)ER
521674.Plim_2379(PF00884)ER
521674.Plim_2376(PF13360)ER
521674.Plim_2374(PF00884)ER; (ER)
521674.Plim_2372(PF00884)ER
521674.Plim_0018(PF06439)ER
521674.Plim_3945(PF06439)(ER); ER
521674.Plim_3949(PF00884)(ER)
521674.Plim_3303(PF00884)ER
521674.Plim_3419(PF00884)ER
521674.Plim_0806(PF13768)mitochondrial
521674.Plim_1957(PF06283)ER
521674.Plim_2550(PF00884)ER
521674.Plim_3796(PF06439)(ER); (mitochondrial)
521674.Plim_1497(PF00884)ER
521674.Plim_1761(PF13180)ER
521674.Plim_1566(PF00884)ER
521674.Plim_1568(PF00884)mitochondrial
521674.Plim_3405(PF06439)ER
521674.Plim_1810(PF00595)(mitochondrial)
521674.Plim_1811(PF13180)ER
521674.Plim_3899(PF13180)ER
521674.Plim_2940(PF06439)ER
521674.Plim_2943(PF13360) (PF13570)(ER)
521674.Plim_1152(PF00595)ER
521674.Plim_0777(PF13360)ER
521674.Plim_2304(PF09861)mitochondrial; (mitochondrial)
521674.Plim_0354(PF00884)ER
521674.Plim_0221(PF13360)ER
521674.Plim_1809(PF13180)ER
521674.Plim_1978(PF13360)(ER); (mitochondrial)
521674.Plim_1972(PF13646)ER
521674.Plim_1975(PF06283)mitochondrial; (ER)
521674.Plim_1379(PF13180)ER
521674.Plim_2933(PF16983)(mitochondrial)
521674.Plim_1166(PF06439)ER
521674.Plim_0166(PF13180)mitochondrial
521674.Plim_3525(PF16871)ER
521674.Plim_0982(PF13360)ER
521674.Plim_4016(PF13180)ER
521674.Plim_3452(PF10162)ER
521674.Plim_3620(PF13180)mitochondrial; (mitochondrial)
521674.Plim_3999(PF00884)ER
521674.Plim_4227(PF13646)ER
521674.Plim_1436(PF13646)ER
521674.Plim_1437(PF03629)ER
521674.Plim_0258(PF13360)(mitochondrial); mitochondrial
521674.Plim_3506(PF13360)ER
521674.Plim_4033(PF13360)(mitochondrial); (plastid)
521674.Plim_3471(PF00595)mitochondrial; (mitochondrial)
521674.Plim_2803(PF06283)ER
521674.Plim_0651(PF00884)ER
521674.Plim_2242(PF13905)ER
521674.Plim_3468(PF00884)ER
521674.Plim_0662(PF00595)ER
521674.Plim_2657(PF00884)(ER)
521674.Plim_1382(PF06283)ER
521674.Plim_3701(PF12006)ER
521674.Plim_1628(PF06283)ER
521674.Plim_0666(PF13646)ER
521674.Plim_0046(PF06439)ER
521674.Plim_3255(PF04450)ER
521674.Plim_2385(PF06439)ER
521674.Plim_2382(PF00884)ER
521674.Plim_3664(PF10142)ER
521674.Plim_1243(PF13180)ER
521674.Plim_3398(PF00884)ER
521674.Plim_3245(PF03983)mitochondrial
521674.Plim_1879(PF00884)ER
521674.Plim_2378(PF14240)ER
521674.Plim_1274(PF00432)ER
521674.Plim_0902(PF13646)mitochondrial
521674.Plim_0456(PF01457)ER
521674.Plim_1519(PF00884)ER
521674.Plim_2292(PF00884)ER
521674.Plim_3640(PF00884)ER
521674.Plim_1881(PF00884)mitochondrial
521674.Plim_2746(PF13646)ER
521674.Plim_1863(PF13360)ER
521674.Plim_3737(PF13180)ER
521674.Plim_0598(PF13360)mitochondrial
521674.Plim_0936(PF00884)ER
521674.Plim_3913(PF00884)(ER)
521674.Plim_4014(PF07726)(ER)
521674.Plim_4240(PF13360)(ER)
521674.Plim_2552(PF13180) (PF00595)
521674.Plim_1708(PF06439)(plastid)
521674.Plim_4053(PF06439)(plastid)
521674.Plim_0501(PF13646)(ER)
521674.Plim_3536(PF03629)(ER)
521674.Plim_3501(PF00884) (PF14707)
521674.Plim_2872(PF06439)(mitochondrial)
521674.Plim_3672(PF06439)(mitochondrial)
521674.Plim_3662(PF00884)(ER)
521674.Plim_4099(PF13905)(mitochondrial)
521674.Plim_0676(PF06439)(mitochondrial)
521674.Plim_3852(PF13360)(mitochondrial)
521674.Plim_2636(PF03629)(plastid)
521674.Plim_1647(PF00884) (PF14707)
521674.Plim_1513(PF14413) (PF04446)
521674.Plim_1699(PF13360)
521674.Plim_2351(PF09445)
521674.Plim_2774(PF07726)
521674.Plim_3584(PF13646)
521674.Plim_1216(PF14237)
521674.Plim_1213(PF00884)
521674.Plim_4007(PF13360)
521674.Plim_1689(PF07726)
521674.Plim_0317(PF09861)
521674.Plim_1999(PF14237)
521674.Plim_3592(PF13360)
521674.Plim_3681(PF00432)
521674.Plim_2887(PF13646)
521674.Plim_1051PF01762
521674.Plim_4021(PF01795)
521674.Plim_3118(PF01142)
521674.Plim_1543(PF01487)
521674.Plim_0308(PF10143)
521674.Plim_0306(PF07678)
521674.Plim_1839(PF01487)
521674.Plim_1851(PF13528)
521674.Plim_3167(PF06439)
521674.Plim_2782(PF13360)
521674.Plim_3570(PF13360)
521674.Plim_1036PF03782
521674.Plim_0571(PF00884)
521674.Plim_1567(PF00884)
521674.Plim_1565(PF00884)
521674.Plim_0211(PF13646)
521674.Plim_2944(PF13360)
521674.Plim_1419(PF07726)
521674.Plim_0773(PF10143)
521674.Plim_0684(PF13646)
521674.Plim_2237(PF07726)
521674.Plim_1801(PF07726)
521674.Plim_1162(PF06439)
521674.Plim_2110PF01762
521674.Plim_0234(PF13360)
521674.Plim_2101(PF01795)
521674.Plim_0245(PF01142)
521674.Plim_3844(PF03803)
521674.Plim_2719(PF13528)
521674.Plim_1730(PF14792)
521674.Plim_2015(PF13180)
521674.Plim_1930(PF13360)
521674.Plim_2393(PF12006)
521674.Plim_3676(PF14237)
521674.Plim_3671(PF07726)
521674.Plim_2733(PF13360)
521674.Plim_3073(PF14237)
521674.Plim_3713(PF03718)
521674.Plim_0706(PF00884)
521674.Plim_2283(PF06439)
521674.Plim_2630(PF13360)
521674.Plim_4104(PF13360)
521674.Plim_3648(PF06439)
521674.Plim_2514(PF13180)
521674.Plim_0615(PF07726)
521674.Plim_3004(PF09861)
521674.Plim_3001(PF13768)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================