Effective results for Prevotella sp. oral taxon 317 str. F0108 (eggnog40)

Summary

Number of putative secreted proteins: 81
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 36 eukaryotic-like domains, contained in 81 proteins (11 high, 70 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
575615.HMPREF0670_00216				(PF16334) (PF16335) (PF17168) (PF08760)	ER
575615.HMPREF0670_00542				(PF12972) (PF12971) (PF05089)	ER
575615.HMPREF0670_00533				(PF12972) (PF12971) (PF05089)	ER
575615.HMPREF0670_02189				PF12256 (PF03534)	(ER)
575615.HMPREF0670_02816				PF12256 (PF03534)	ER
575615.HMPREF0670_01423				(PF16313)	ER
575615.HMPREF0670_01985				(PF09471)	ER
575615.HMPREF0670_02262				(PF03544)	(mitochondrial)
575615.HMPREF0670_02040				(PF00686)	ER
575615.HMPREF0670_01790				PF13859	ER
575615.HMPREF0670_01542				PF03644	ER
575615.HMPREF0670_01541				PF03644	(ER)
575615.HMPREF0670_00373				(PF03051)	ER
575615.HMPREF0670_02449				(PF00328)	ER
575615.HMPREF0670_00794				(PF09471)	ER
575615.HMPREF0670_02322				(PF03544)	(ER); (mitochondrial)
575615.HMPREF0670_02321				(PF03544)	ER
575615.HMPREF0670_01216				(PF03544)	ER
575615.HMPREF0670_01460				(PF13905)	ER
575615.HMPREF0670_01587				(PF03051)	(ER)
575615.HMPREF0670_02631				(PF13905)	ER
575615.HMPREF0670_02357				(PF16313)	ER; (mitochondrial)
575615.HMPREF0670_01531				PF03644	ER
575615.HMPREF0670_02034				(PF13306)	ER; (ER)
575615.HMPREF0670_00386				(PF00328)	ER
575615.HMPREF0670_02431				(PF03544)	ER
575615.HMPREF0670_02430				(PF03544)	(mitochondrial)
575615.HMPREF0670_02659				(PF13306)	ER
575615.HMPREF0670_02732				(PF16313)	(mitochondrial)
575615.HMPREF0670_02424				(PF03544)	ER
575615.HMPREF0670_02425				(PF03544)	(ER); ER
575615.HMPREF0670_02426				(PF03544)	ER
575615.HMPREF0670_02427				(PF03544)	ER
575615.HMPREF0670_00001				(PF15588)	(mitochondrial)
575615.HMPREF0670_00132				(PF03534)	ER
575615.HMPREF0670_02706				(PF13306)	mitochondrial; ER
575615.HMPREF0670_00748				PF12812	ER
575615.HMPREF0670_00101				(PF13306)	ER
575615.HMPREF0670_00109				(PF01223)	ER
575615.HMPREF0670_00234				(PF01223)	(ER)
575615.HMPREF0670_00691				(PF07837) (PF02971)
575615.HMPREF0670_02815				PF15636 (PF05593)
575615.HMPREF0670_00425				(PF01715)	(mitochondrial)
575615.HMPREF0670_00846				(PF05970) (PF02689)
575615.HMPREF0670_00843				(PF01715)	(mitochondrial)
575615.HMPREF0670_02733				(PF16313)	(plastid)
575615.HMPREF0670_01735				(PF01531)	(mitochondrial)
575615.HMPREF0670_02428				(PF03544)	(mitochondrial)
575615.HMPREF0670_00804				(PF05970)
575615.HMPREF0670_02876				PF12256
575615.HMPREF0670_00238				(PF01223)
575615.HMPREF0670_00582				(PF03630)
575615.HMPREF0670_02472				(PF13905)
575615.HMPREF0670_02694				(PF00686)
575615.HMPREF0670_02862				PF12256
575615.HMPREF0670_02853				(PF05593)
575615.HMPREF0670_02238				(PF16314)
575615.HMPREF0670_02825				(PF05593)
575615.HMPREF0670_02228				(PF05593)
575615.HMPREF0670_02229				(PF05593)
575615.HMPREF0670_02222				(PF05593)	not used
575615.HMPREF0670_02226				(PF05593)
575615.HMPREF0670_02315				(PF16011)
575615.HMPREF0670_00089				(PF03051)
575615.HMPREF0670_02104				(PF05593)
575615.HMPREF0670_02586				(PF13306)
575615.HMPREF0670_02589				(PF13306)
575615.HMPREF0670_02809				(PF05593)	not used
575615.HMPREF0670_00188				PF16269
575615.HMPREF0670_02114				(PF13306)
575615.HMPREF0670_02595				(PF13306)
575615.HMPREF0670_02593				(PF09295)
575615.HMPREF0670_02901				(PF05593)	not used
575615.HMPREF0670_02911				(PF05593)	not used
575615.HMPREF0670_02917				(PF05593)	not used
575615.HMPREF0670_02919				(PF05593)	not used
575615.HMPREF0670_01255				(PF13151)	not used
575615.HMPREF0670_02380				(PF13905)
575615.HMPREF0670_02658				(PF13306)
575615.HMPREF0670_00265				(PF01531)
575615.HMPREF0670_02675				(PF03544)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================