Effective results for Streptomyces viridochromogenes DSM 40736 (eggnog40)
Summary
Number of putative secreted proteins: 274
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 56 eukaryotic-like domains, contained in 274 proteins (1 high, 273 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 591159.SSQG_06483 | (PF02129) (PF08530) | ER | |||
| 591159.SSQG_02771 | (PF02129) (PF08530) | mitochondrial | |||
| 591159.SSQG_06415 | (PF02129) (PF08530) | (mitochondrial) | |||
| 591159.SSQG_06734 | (PF02129) (PF08530) | mitochondrial | |||
| 591159.SSQG_02159 | (PF09362) | (ER) | |||
| 591159.SSQG_00844 | (PF00652) | (mitochondrial); plastid | |||
| 591159.SSQG_01700 | (PF13185) | ER | |||
| 591159.SSQG_00860 | (PF00652) | mitochondrial | |||
| 591159.SSQG_05049 | (PF07250) | (ER); ER | |||
| 591159.SSQG_05046 | (PF13641) | ER | |||
| 591159.SSQG_00498 | (PF07228) | mitochondrial; (mitochondrial) | |||
| 591159.SSQG_00491 | (PF07335) | mitochondrial | |||
| 591159.SSQG_06894 | (PF05653) | ER | |||
| 591159.SSQG_00806 | (PF00544) | (ER); (mitochondrial) | |||
| 591159.SSQG_00807 | (PF03211) | mitochondrial | |||
| 591159.SSQG_06407 | (PF08386) | (ER) | |||
| 591159.SSQG_02518 | (PF08386) | (mitochondrial) | |||
| 591159.SSQG_04022 | (PF07228) (PF13185) | (ER) | |||
| 591159.SSQG_00101 | (PF08386) | ER | |||
| 591159.SSQG_06259 | (PF14686) (PF09284) (PF14683) | ||||
| 591159.SSQG_06258 | (PF00652) | ER | |||
| 591159.SSQG_01453 | (PF08022) | ER | |||
| 591159.SSQG_07440 | (PF14587) | (mitochondrial); mitochondrial | |||
| 591159.SSQG_06271 | (PF01419) | ER | |||
| 591159.SSQG_03229 | (PF00652) | mitochondrial | |||
| 591159.SSQG_00085 | (PF04264) | (ER) | |||
| 591159.SSQG_04170 | (PF01839) | ER | |||
| 591159.SSQG_04175 | (PF13641) | mitochondrial; ER | |||
| 591159.SSQG_01275 | (PF08376) | ER | |||
| 591159.SSQG_06721 | (PF09362) | (ER) | |||
| 591159.SSQG_01020 | (PF05653) | ER | |||
| 591159.SSQG_00701 | (PF08386) | mitochondrial | |||
| 591159.SSQG_06114 | (PF13641) | ER | |||
| 591159.SSQG_05842 | (PF03747) | (ER) | |||
| 591159.SSQG_02896 | (PF01341) | (mitochondrial) | |||
| 591159.SSQG_05981 | (PF14378) | ER | |||
| 591159.SSQG_06379 | (PF07228) | ER | |||
| 591159.SSQG_07359 | (PF07228) | ER | |||
| 591159.SSQG_00974 | (PF07228) | (mitochondrial) | |||
| 591159.SSQG_06536 | (PF01341) | ER | |||
| 591159.SSQG_03973 | (PF10009) | mitochondrial; (mitochondrial) | |||
| 591159.SSQG_00851 | (PF00652) | mitochondrial | |||
| 591159.SSQG_00853 | (PF00652) | ER | |||
| 591159.SSQG_00852 | (PF00652) | (ER); plastid | |||
| 591159.SSQG_00854 | (PF00652) | mitochondrial | |||
| 591159.SSQG_01106 | (PF08386) | ER | |||
| 591159.SSQG_06590 | (PF04264) | mitochondrial | |||
| 591159.SSQG_02101 | (PF02450) | (ER) | |||
| 591159.SSQG_06695 | (PF08386) | (ER); ER | |||
| 591159.SSQG_03653 | (PF00544) | (ER) | |||
| 591159.SSQG_00661 | (PF13641) | ER | |||
| 591159.SSQG_06889 | (PF07228) | ER | |||
| 591159.SSQG_04487 | (PF03995) | ER | |||
| 591159.SSQG_00645 | (PF07228) | ER | |||
| 591159.SSQG_00641 | (PF03664) | ER | |||
| 591159.SSQG_00642 | (PF01341) | ER | |||
| 591159.SSQG_00562 | (PF07228) | ER | |||
| 591159.SSQG_00300 | (PF07228) | mitochondrial | |||
| 591159.SSQG_07455 | (PF04264) | (mitochondrial) | |||
| 591159.SSQG_00158 | (PF07228) | (mitochondrial); (plastid) | |||
| 591159.SSQG_06268 | (PF07335) | ER | |||
| 591159.SSQG_02582 | (PF04264) | mitochondrial | |||
| 591159.SSQG_01074 | (PF13653) | mitochondrial | |||
| 591159.SSQG_04167 | (PF01839) | ER | |||
| 591159.SSQG_04168 | (PF01839) | ER | |||
| 591159.SSQG_01011 | (PF12222) | ER | |||
| 591159.SSQG_07601 | (PF07228) | mitochondrial | |||
| 591159.SSQG_05606 | (PF08376) | mitochondrial; (mitochondrial) | |||
| 591159.SSQG_06387 | (PF07286) | (mitochondrial); plastid | |||
| 591159.SSQG_04124 | (PF03068) | ER | |||
| 591159.SSQG_06974 | (PF05270) | ER | |||
| 591159.SSQG_07592 | (PF01186) | mitochondrial | |||
| 591159.SSQG_07622 | (PF02983) | ER | |||
| 591159.SSQG_01637 | (PF02983) | ER; (ER) | |||
| 591159.SSQG_01638 | (PF02983) | mitochondrial; (mitochondrial) | |||
| 591159.SSQG_00224 | (PF02983) | mitochondrial; ER | |||
| 591159.SSQG_07327 | (PF02983) | mitochondrial | |||
| 591159.SSQG_07303 | (PF07228) (PF13185) | not used | |||
| 591159.SSQG_03350 | (PF02129) (PF08530) | ||||
| 591159.SSQG_06449 | (PF07228) (PF13185) | ||||
| 591159.SSQG_06090 | (PF07228) | (ER) | |||
| 591159.SSQG_05294 | (PF04539) (PF04545) | ||||
| 591159.SSQG_00358 | (PF04539) (PF04545) | ||||
| 591159.SSQG_03783 | (PF04264) | (mitochondrial) | |||
| 591159.SSQG_00140 | (PF07228) (PF13185) | ||||
| 591159.SSQG_07059 | (PF06245) | (plastid) | |||
| 591159.SSQG_07428 | (PF07228) (PF13185) | ||||
| 591159.SSQG_00278 | (PF04539) (PF04545) | ||||
| 591159.SSQG_00933 | (PF02129) (PF08530) | ||||
| 591159.SSQG_02893 | (PF07646) | (mitochondrial) | |||
| 591159.SSQG_00728 | (PF00183) (PF13589) | ||||
| 591159.SSQG_06981 | (PF07228) (PF13185) | ||||
| 591159.SSQG_06515 | (PF04539) (PF04545) | ||||
| 591159.SSQG_07264 | (PF02983) | (ER) | |||
| 591159.SSQG_03139 | (PF04539) (PF04545) | ||||
| 591159.SSQG_07336 | (PF07228) (PF13185) | ||||
| 591159.SSQG_06475 | (PF07228) (PF13185) | ||||
| 591159.SSQG_03344 | (PF02129) (PF08530) | ||||
| 591159.SSQG_00629 | (PF05270) | (mitochondrial) | |||
| 591159.SSQG_00644 | (PF07228) (PF13185) | ||||
| 591159.SSQG_00640 | (PF00652) | plastid | |||
| 591159.SSQG_05139 | (PF07228) (PF13185) | ||||
| 591159.SSQG_00568 | (PF02129) (PF08530) | ||||
| 591159.SSQG_00306 | (PF04539) (PF04545) | ||||
| 591159.SSQG_00175 | (PF00183) (PF13589) | ||||
| 591159.SSQG_00178 | (PF03318) | (ER) | |||
| 591159.SSQG_07488 | (PF04539) (PF04545) | ||||
| 591159.SSQG_07269 | (PF07228) (PF13185) | ||||
| 591159.SSQG_07265 | (PF07228) (PF13185) | ||||
| 591159.SSQG_03779 | (PF04539) (PF04545) | ||||
| 591159.SSQG_03778 | (PF04539) (PF04545) | ||||
| 591159.SSQG_04511 | (PF13535) | plastid | |||
| 591159.SSQG_04169 | (PF01839) | plastid | |||
| 591159.SSQG_05629 | (PF00183) (PF13589) | ||||
| 591159.SSQG_03717 | (PF04539) (PF04545) | ||||
| 591159.SSQG_03291 | (PF04539) (PF04545) | ||||
| 591159.SSQG_05669 | (PF04539) (PF04545) | ||||
| 591159.SSQG_02461 | (PF04539) (PF04545) | ||||
| 591159.SSQG_05854 | (PF04539) (PF04545) | ||||
| 591159.SSQG_06998 | (PF04539) (PF04545) | ||||
| 591159.SSQG_06818 | (PF07228) (PF13185) | ||||
| 591159.SSQG_06870 | (PF03984) | ||||
| 591159.SSQG_05219 | (PF08386) | ||||
| 591159.SSQG_01326 | (PF01341) | ||||
| 591159.SSQG_00630 | (PF00652) | ||||
| 591159.SSQG_06581 | (PF03259) | ||||
| 591159.SSQG_06583 | (PF03029) | ||||
| 591159.SSQG_02173 | (PF14378) | ||||
| 591159.SSQG_01397 | (PF05270) | ||||
| 591159.SSQG_02917 | (PF13589) | ||||
| 591159.SSQG_02911 | (PF02450) | ||||
| 591159.SSQG_06445 | (PF10009) | ||||
| 591159.SSQG_00471 | (PF07228) | ||||
| 591159.SSQG_05705 | (PF00652) | ||||
| 591159.SSQG_00861 | (PF03664) | ||||
| 591159.SSQG_06421 | (PF02882) | ||||
| 591159.SSQG_06159 | (PF07228) | ||||
| 591159.SSQG_04056 | (PF04264) | ||||
| 591159.SSQG_04051 | (PF13185) | ||||
| 591159.SSQG_05296 | (PF02148) | ||||
| 591159.SSQG_01196 | (PF00652) | ||||
| 591159.SSQG_06174 | (PF03259) | ||||
| 591159.SSQG_06175 | (PF08376) | ||||
| 591159.SSQG_06172 | (PF03029) | ||||
| 591159.SSQG_01506 | (PF03029) | ||||
| 591159.SSQG_01508 | (PF03259) | ||||
| 591159.SSQG_02684 | (PF04545) | ||||
| 591159.SSQG_01971 | (PF03747) | not used | |||
| 591159.SSQG_01970 | (PF03747) | ||||
| 591159.SSQG_01973 | (PF03747) | ||||
| 591159.SSQG_01972 | (PF03747) | ||||
| 591159.SSQG_00161 | (PF04545) | ||||
| 591159.SSQG_01788 | (PF00544) | ||||
| 591159.SSQG_01785 | (PF03211) | ||||
| 591159.SSQG_06780 | (PF03029) | ||||
| 591159.SSQG_07250 | (PF00652) | ||||
| 591159.SSQG_05781 | (PF13185) | ||||
| 591159.SSQG_01102 | (PF07228) | ||||
| 591159.SSQG_03784 | (PF13185) | ||||
| 591159.SSQG_03785 | (PF13185) | ||||
| 591159.SSQG_05338 | (PF03259) | ||||
| 591159.SSQG_05337 | (PF08376) | ||||
| 591159.SSQG_03014 | (PF13641) | ||||
| 591159.SSQG_06274 | (PF13185) | ||||
| 591159.SSQG_02572 | (PF07228) | ||||
| 591159.SSQG_02573 | (PF13185) | ||||
| 591159.SSQG_04505 | (PF13535) | ||||
| 591159.SSQG_00083 | (PF01839) | ||||
| 591159.SSQG_01687 | (PF06245) | ||||
| 591159.SSQG_03763 | (PF07228) | ||||
| 591159.SSQG_07423 | (PF03259) | ||||
| 591159.SSQG_06922 | (PF07228) | not used | |||
| 591159.SSQG_06928 | (PF04545) | ||||
| 591159.SSQG_02298 | (PF14378) | ||||
| 591159.SSQG_01274 | (PF03259) | ||||
| 591159.SSQG_01271 | (PF03029) | ||||
| 591159.SSQG_06059 | (PF04545) | ||||
| 591159.SSQG_04767 | (PF03995) | ||||
| 591159.SSQG_04766 | (PF03995) | ||||
| 591159.SSQG_04075 | (PF08386) | ||||
| 591159.SSQG_00250 | (PF03029) | ||||
| 591159.SSQG_06707 | (PF01896) | ||||
| 591159.SSQG_06706 | (PF07228) | ||||
| 591159.SSQG_02623 | (PF13185) | ||||
| 591159.SSQG_07537 | (PF07228) | ||||
| 591159.SSQG_05783 | (PF13185) | ||||
| 591159.SSQG_07619 | (PF07228) | ||||
| 591159.SSQG_00398 | (PF07228) | ||||
| 591159.SSQG_00932 | (PF13535) | ||||
| 591159.SSQG_00931 | (PF07228) | ||||
| 591159.SSQG_02646 | (PF07228) | ||||
| 591159.SSQG_06980 | (PF13185) | ||||
| 591159.SSQG_02323 | (PF13641) | ||||
| 591159.SSQG_00212 | (PF09362) | ||||
| 591159.SSQG_01882 | (PF04264) | ||||
| 591159.SSQG_06686 | (PF14378) | ||||
| 591159.SSQG_03309 | (PF10009) | ||||
| 591159.SSQG_04894 | (PF02882) | ||||
| 591159.SSQG_04523 | (PF13535) | ||||
| 591159.SSQG_03170 | (PF12862) | ||||
| 591159.SSQG_02165 | (PF07228) | ||||
| 591159.SSQG_06864 | (PF06241) | ||||
| 591159.SSQG_03694 | (PF07228) | ||||
| 591159.SSQG_05593 | (PF04264) | ||||
| 591159.SSQG_05598 | (PF03029) | ||||
| 591159.SSQG_03341 | (PF07228) | ||||
| 591159.SSQG_02904 | (PF07228) | ||||
| 591159.SSQG_01101 | (PF07228) | ||||
| 591159.SSQG_06457 | (PF03747) | ||||
| 591159.SSQG_04360 | (PF13641) | ||||
| 591159.SSQG_00990 | (PF13535) | ||||
| 591159.SSQG_04620 | (PF13641) | ||||
| 591159.SSQG_00299 | (PF07228) | ||||
| 591159.SSQG_01474 | (PF07228) | ||||
| 591159.SSQG_05035 | (PF04545) | ||||
| 591159.SSQG_04979 | (PF01744) | ||||
| 591159.SSQG_02386 | (PF13363) | ||||
| 591159.SSQG_04604 | (PF00648) | ||||
| 591159.SSQG_03383 | (PF03747) | ||||
| 591159.SSQG_00813 | PF03452 | ||||
| 591159.SSQG_00487 | (PF07228) | ||||
| 591159.SSQG_01283 | (PF07286) | ||||
| 591159.SSQG_06165 | (PF08022) | ||||
| 591159.SSQG_02866 | (PF14378) | ||||
| 591159.SSQG_03008 | (PF04545) | ||||
| 591159.SSQG_07543 | (PF02148) | ||||
| 591159.SSQG_01791 | (PF00544) | ||||
| 591159.SSQG_07240 | (PF00652) | ||||
| 591159.SSQG_07243 | (PF07228) | ||||
| 591159.SSQG_04493 | (PF13535) | ||||
| 591159.SSQG_02222 | (PF13535) | ||||
| 591159.SSQG_05114 | (PF07228) | ||||
| 591159.SSQG_00325 | (PF02148) | ||||
| 591159.SSQG_06491 | (PF01896) | ||||
| 591159.SSQG_01052 | (PF03029) | ||||
| 591159.SSQG_01050 | (PF03259) | ||||
| 591159.SSQG_01054 | (PF03259) | ||||
| 591159.SSQG_01055 | (PF08376) | ||||
| 591159.SSQG_07458 | (PF07228) | ||||
| 591159.SSQG_00157 | (PF13185) | ||||
| 591159.SSQG_02801 | (PF13641) | ||||
| 591159.SSQG_04517 | (PF13535) | ||||
| 591159.SSQG_02005 | (PF10009) | ||||
| 591159.SSQG_03750 | (PF13589) | ||||
| 591159.SSQG_04161 | (PF00652) | ||||
| 591159.SSQG_05340 | (PF03029) | ||||
| 591159.SSQG_07222 | (PF03259) | ||||
| 591159.SSQG_07224 | (PF03029) | ||||
| 591159.SSQG_00051 | (PF03995) | ||||
| 591159.SSQG_03084 | (PF13641) | ||||
| 591159.SSQG_05604 | (PF03259) | ||||
| 591159.SSQG_05602 | (PF03029) | ||||
| 591159.SSQG_05601 | (PF08376) | ||||
| 591159.SSQG_05600 | (PF03259) | ||||
| 591159.SSQG_00654 | (PF13185) | ||||
| 591159.SSQG_01659 | (PF03747) | ||||
| 591159.SSQG_00921 | (PF07228) | ||||
| 591159.SSQG_06384 | (PF08376) | ||||
| 591159.SSQG_03711 | (PF07228) | ||||
| 591159.SSQG_03715 | (PF07228) | ||||
| 591159.SSQG_02611 | (PF01839) | ||||
| 591159.SSQG_01835 | (PF05270) | ||||
| 591159.SSQG_00248 | (PF03259) | ||||
| 591159.SSQG_06975 | (PF07228) | ||||
| 591159.SSQG_05996 | (PF04264) | ||||
| 591159.SSQG_03598 | (PF07228) | ||||
| 591159.SSQG_06778 | (PF03259) | ||||
| 591159.SSQG_04843 | (PF04545) | ||||
| 591159.SSQG_03825 | (PF07228) | ||||
| 591159.SSQG_07121 | (PF02882) | ||||
| 591159.SSQG_00204 | (PF07228) | ||||
| 591159.SSQG_00205 | (PF13185) | ||||
| 591159.SSQG_04084 | (PF14587) | ||||
| 591159.SSQG_05935 | (PF07228) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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