Metamenu

Effective results for Alistipes shahii WAL 8301 (eggnog40)

Summary

Number of putative secreted proteins: 115
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 115 proteins (22 high, 93 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
717959.AL1_01210(PF16889) (PF07940)ER
717959.AL1_00220(PF07940) (PF16332)ER
717959.AL1_00380(PF16875) (PF16874)ER
717959.AL1_25580(PF16875) (PF16874)ER
717959.AL1_16560(PF16875) (PF16874)ER
717959.AL1_01260(PF16889) (PF07940)ER
717959.AL1_07830(PF09992)ER
717959.AL1_25080(PF00728)ER
717959.AL1_21290(PF03372)ER
717959.AL1_19570(PF00589)(mitochondrial)
717959.AL1_13760(PF00728)ER
717959.AL1_23620(PF09992)(ER)
717959.AL1_07460(PF00589)mitochondrial
717959.AL1_13790(PF00728)ER
717959.AL1_13800PF16401ER
717959.AL1_09060(PF00589)(mitochondrial)
717959.AL1_28780(PF03372)ER
717959.AL1_14740PF02265ER
717959.AL1_00210(PF07940)ER
717959.AL1_10200(PF00589)mitochondrial
717959.AL1_09070(PF00589)(mitochondrial)
717959.AL1_27270(PF09992)ER
717959.AL1_23330(PF00589)mitochondrial
717959.AL1_03180(PF02544)ER
717959.AL1_28790(PF01223)ER
717959.AL1_08220(PF02278)ER
717959.AL1_28890(PF00589)(mitochondrial)
717959.AL1_05800PF02265ER
717959.AL1_30570PF02265ER
717959.AL1_18130(PF01223)ER
717959.AL1_09050(PF00589)mitochondrial; (mitochondrial)
717959.AL1_07300(PF00589)mitochondrial
717959.AL1_16520(PF00589)(mitochondrial)
717959.AL1_07230(PF00728)ER
717959.AL1_17050(PF01223)ER
717959.AL1_07780(PF03372)ER; (ER)
717959.AL1_12460(PF00589)(mitochondrial)
717959.AL1_30770(PF03372)ER
717959.AL1_27050PF16401(ER)
717959.AL1_23990PF02265ER
717959.AL1_25100(PF03372)ER
717959.AL1_30340(PF03372)ER
717959.AL1_08200(PF02278)ER
717959.AL1_08020(PF16387)ER
717959.AL1_14530PF16401ER
717959.AL1_26120(PF03372)ER
717959.AL1_03690(PF00589)(mitochondrial)
717959.AL1_15720(PF16387)ER
717959.AL1_00350(PF03372)ER
717959.AL1_14450(PF09992)ER
717959.AL1_09200PF03432(mitochondrial)
717959.AL1_24170(PF00589)mitochondrial
717959.AL1_23650(PF09992)ER
717959.AL1_19260(PF00728)ER
717959.AL1_00280(PF02278)ER
717959.AL1_01890(PF16889)ER
717959.AL1_13830(PF03372)ER
717959.AL1_21350(PF03372)ER
717959.AL1_04570(PF02971) (PF07837)
717959.AL1_10550(PF00589)(mitochondrial)
717959.AL1_00450(PF13155) (PF01807)
717959.AL1_31440(PF00589)(mitochondrial)
717959.AL1_13700(PF00589)(mitochondrial)
717959.AL1_11070PF16401(ER)
717959.AL1_07770(PF13653)(plastid)
717959.AL1_20040(PF13155) (PF01807)
717959.AL1_08000(PF03372)(ER)
717959.AL1_09180(PF13155) (PF01807)
717959.AL1_01270(PF07940)(mitochondrial)
717959.AL1_16470(PF13155) (PF01807)
717959.AL1_19560(PF00589)
717959.AL1_06000PF03432
717959.AL1_19220(PF00589)
717959.AL1_00470PF03432
717959.AL1_07340(PF00589)
717959.AL1_24100PF03432
717959.AL1_23820(PF00589)
717959.AL1_05960(PF00589)
717959.AL1_04180(PF03372)
717959.AL1_22870(PF00589)
717959.AL1_31660PF03432
717959.AL1_20340(PF00589)
717959.AL1_16990(PF02475)
717959.AL1_31580(PF00589)
717959.AL1_29550(PF03372)
717959.AL1_29310PF01348
717959.AL1_26200(PF03372)
717959.AL1_32490PF16401
717959.AL1_20540PF03432
717959.AL1_22650(PF00589)
717959.AL1_06070(PF00589)
717959.AL1_20870(PF00589)
717959.AL1_10700(PF05693)
717959.AL1_13930(PF00728)
717959.AL1_12080PF03432
717959.AL1_08140(PF16011)
717959.AL1_03430PF01348
717959.AL1_24610(PF00589)
717959.AL1_06340(PF00589)
717959.AL1_26480(PF00589)
717959.AL1_04640(PF03372)
717959.AL1_27550PF01348
717959.AL1_25000(PF00589)
717959.AL1_09300(PF00589)
717959.AL1_26600(PF00589)
717959.AL1_31570(PF00589)
717959.AL1_22910(PF00589)
717959.AL1_23710(PF00589)
717959.AL1_06140PF03432
717959.AL1_08970PF03432
717959.AL1_07700(PF00589)
717959.AL1_19110PF03432
717959.AL1_26360(PF03372)
717959.AL1_22420(PF16314)
717959.AL1_20860(PF00589)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================